Os08g0421700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCHC-type domain containing protein.
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Os08g0421700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 248.9 | 0.741 | 7.25 | -0.869 | 1.98 | -1.59 | 1.01 | 7.31 | 0.985 | 21.1 | 25.2 | 4371 | -- | -- |
| 269.83 | 0.765 | 7.06 | 0.421 | 2.01 | -1.51 | 1 | -- | 1.19 | 21.2 | 21.1 | 7629 | -- | -- |
| 252.39 | 0.74 | 7.24 | -0.895 | 1.99 | -1.59 | -- | 7.27 | 0.992 | 21.1 | 25.25 | 4397 | -- | -- |
| 273.09 | 0.77 | 7.06 | 0.375 | 2.01 | -1.51 | -- | -- | 1.19 | 21.2 | 21.1 | 7724 | -- | -- |
| 473.28 | 1.01 | 7.22 | -1.07 | -- | -1.82 | -- | 7.55 | 0.966 | -- | 26.51 | 5162 | -- | -- |
| 318.67 | 0.837 | 6.93 | 1.53 | 2.03 | -- | 1 | -- | 1.74 | 21.3 | -- | -- | -- | -- |
| 322.26 | 0.841 | 6.93 | 1.49 | 2.03 | -- | -- | -- | 1.74 | 21.2 | -- | -- | -- | -- |
| 496.14 | 1.04 | 7.06 | -0.44 | -- | -1.98 | -- | -- | 1.07 | -- | 18.8 | 29569 | -- | -- |
| 267.83 | 0.762 | 7.06 | -- | 2.01 | -1.7 | -- | -- | 1.18 | 21.1 | 18.8 | 30301 | -- | -- |
| 561.14 | 1.11 | 6.88 | 1.5 | -- | -- | -- | -- | 1.73 | -- | -- | -- | -- | -- |
| 381.04 | 0.913 | 6.97 | -- | 2.03 | -- | -- | -- | 1.57 | 21.3 | -- | -- | -- | -- |
| 501.17 | 1.04 | 7.01 | -- | -- | -1.76 | -- | -- | 1.16 | -- | 19 | 28105 | -- | -- |
| 620.6 | 1.16 | 6.92 | -- | -- | -- | -- | -- | 1.56 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 4 | 238.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 5 | 238.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 6 | 238.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 12 | 239.66 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 51 | 243.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 56 | 244.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 60 | 244.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 61 | 244.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 63 | 244.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 20 |
| 75 | 244.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 20 |
| 88 | 245.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 94 | 245.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 12 |
| 103 | 245.61 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 107 | 245.63 | radiation | 10 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 116 | 245.65 | temperature | 25 | 4320 | < th | dose independent | sin | 7 | NA |
| 118 | 245.66 | temperature | 25 | 4320 | > th | dose independent | sin | 7 | NA |
| 135 | 245.74 | radiation | 10 | 43200 | < th | dose independent | sin | 9 | NA |
| 151 | 245.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 158 | 245.96 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 171 | 246.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 220 | 246.45 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 12 |
| 224 | 246.50 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 266 | 246.59 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 292 | 246.73 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 353 | 247.13 | radiation | 40 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 360 | 247.15 | radiation | 40 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 363 | 247.16 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 378 | 247.24 | radiation | 20 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 384 | 247.25 | radiation | 20 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 445 | 247.35 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 447 | 247.35 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 571 | 247.70 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 574 | 247.71 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 656 | 248.01 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 753 | 248.21 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 766 | 248.30 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 776 | 248.31 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 786 | 248.33 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 835 | 248.50 | radiation | 40 | 43200 | < th | dose independent | sin | 16 | NA |
| 895 | 248.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 926 | 248.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 949 | 248.78 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 955 | 248.79 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 996 | 248.79 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 21 |