Os08g0412200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0412200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.63 | 0.341 | 11.3 | -0.428 | 0.14 | 1.68 | -0.676 | -1.58 | -0.168 | 12.8 | 18.41 | 2253 | -- | -- |
| 54.76 | 0.345 | 11.2 | -0.00346 | 0.135 | 1.65 | -0.558 | -- | -0.0522 | 13 | 17.95 | 2222 | -- | -- |
| 54.26 | 0.343 | 11.3 | -0.395 | 0.188 | 1.65 | -- | -1.37 | -0.158 | 14.7 | 18.5 | 2353 | -- | -- |
| 55.91 | 0.348 | 11.2 | -0.0298 | 0.171 | 1.63 | -- | -- | -0.0542 | 14.4 | 18 | 2299 | -- | -- |
| 55.04 | 0.346 | 11.3 | -0.335 | -- | 1.66 | -- | -1.27 | -0.148 | -- | 18.4 | 1927 | -- | -- |
| 116.93 | 0.507 | 11.1 | 0.627 | 0.153 | -- | 0.684 | -- | 0.305 | 21.4 | -- | -- | -- | -- |
| 118.33 | 0.509 | 11.1 | 0.605 | 0.173 | -- | -- | -- | 0.306 | 19.7 | -- | -- | -- | -- |
| 56.66 | 0.351 | 11.2 | -0.00283 | -- | 1.65 | -- | -- | -0.0474 | -- | 18 | 1940 | -- | -- |
| 55.92 | 0.348 | 11.2 | -- | 0.171 | 1.62 | -- | -- | -0.0486 | 14.6 | 18 | 2300 | -- | -- |
| 119.95 | 0.512 | 11.1 | 0.603 | -- | -- | -- | -- | 0.303 | -- | -- | -- | -- | -- |
| 127.98 | 0.529 | 11.2 | -- | 0.169 | -- | -- | -- | 0.239 | 20 | -- | -- | -- | -- |
| 56.66 | 0.351 | 11.2 | -- | -- | 1.65 | -- | -- | -0.0511 | -- | 18 | 1941 | -- | -- |
| 129.54 | 0.531 | 11.2 | -- | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 13 | 53.13 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 25 | 53.35 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 33 | 53.54 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 39 | 53.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 177 | 54.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 315 | 55.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 511 | 56.24 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 523 | 56.27 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 623 | 56.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 639 | 56.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 661 | 56.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |