BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0412200 Os08g0412200|AK059631
         (214 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04600.1  | chr5:1323700-1325486 FORWARD LENGTH=223            214   3e-56

>AT5G04600.1 | chr5:1323700-1325486 FORWARD LENGTH=223
          Length = 222

 Score =  214 bits (545), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 136/187 (72%), Gaps = 2/187 (1%)

Query: 28  DFLPLEERPGKKRAREEQPEEPENTSTVLYIGHIPHXXXXXXXXXXXXXXXTVKRLRIAR 87
           DFLPLE  P +K      P +  N +TVLYIG IPH               TVKR+R+AR
Sbjct: 36  DFLPLEGGPARKAPVTTPPLQ--NKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVAR 93

Query: 88  NRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAIVPPEKIHPKLWKGVRRGF 147
           N+KTGKSKH+GFI+FE+PEVA+I A  MN+YLL EH L++ ++ PE + P LW+G +  F
Sbjct: 94  NKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNF 153

Query: 148 IPIDRVAIERRRLNKDKTIEEHKKLVDKIVKRDEKRRKRIKAAGIDYECPPLIGSVQPSA 207
            P+D V IERR+LNK++T+EEH+K++ KIVK+D+KRRKRI+AAGI+YECP L+G+ QP  
Sbjct: 154 KPVDSVQIERRQLNKERTLEEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVP 213

Query: 208 KKIKFED 214
           K+IKF +
Sbjct: 214 KRIKFSE 220



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,485,749
Number of extensions: 173548
Number of successful extensions: 908
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)