Os08g0411900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os08g0411900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.72 | 0.344 | 8.68 | 1.98 | 0.596 | -0.819 | 0.0956 | 0.302 | 0.414 | 22.2 | 76 | 1443 | -- | -- |
| 53.8 | 0.342 | 8.68 | 1.94 | 0.604 | -0.812 | 0.0777 | -- | 0.407 | 22.3 | 76 | 1418 | -- | -- |
| 53.73 | 0.341 | 8.68 | 1.98 | 0.605 | -0.83 | -- | 0.31 | 0.417 | 22.3 | 76 | 1418 | -- | -- |
| 53.78 | 0.342 | 8.68 | 1.95 | 0.613 | -0.826 | -- | -- | 0.406 | 22.4 | 76 | 1395 | -- | -- |
| 74.4 | 0.402 | 8.66 | 2 | -- | -0.849 | -- | 0.481 | 0.419 | -- | 75.44 | 1509 | -- | -- |
| 66.57 | 0.382 | 8.7 | 1.85 | 0.612 | -- | 0.0169 | -- | 0.333 | 22.2 | -- | -- | -- | -- |
| 66.57 | 0.382 | 8.7 | 1.85 | 0.611 | -- | -- | -- | 0.333 | 22.2 | -- | -- | -- | -- |
| 74.78 | 0.403 | 8.67 | 1.95 | -- | -0.823 | -- | -- | 0.406 | -- | 75.64 | 1508 | -- | -- |
| 143.83 | 0.559 | 8.69 | -- | 0.619 | -0.874 | -- | -- | 0.287 | 20.8 | 83 | 1797 | -- | -- |
| 89.24 | 0.441 | 8.68 | 1.86 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 156.44 | 0.585 | 8.74 | -- | 0.621 | -- | -- | -- | 0.128 | 22.4 | -- | -- | -- | -- |
| 157.71 | 0.585 | 8.69 | -- | -- | -1.12 | -- | -- | 0.28 | -- | 88.03 | 1546 | -- | -- |
| 180.04 | 0.626 | 8.73 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 2 | 54.27 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 5 | 54.35 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 7 | 54.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 9 | 54.41 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 12 | 54.43 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 15 | 54.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 22 | 54.50 | humidity | 70 | 1440 | > th | dose dependent | sin | 0 | NA |
| 25 | 54.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 26 | 54.53 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 65 | 54.67 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 66 | 54.67 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 89 | 54.72 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 161 | 54.83 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 162 | 54.83 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 174 | 54.85 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 219 | 54.91 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 220 | 54.91 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 234 | 54.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 235 | 54.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 242 | 54.93 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 349 | 55.03 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 22 |
| 393 | 55.08 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 416 | 55.10 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 448 | 55.13 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 467 | 55.14 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 518 | 55.19 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 542 | 55.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 543 | 55.22 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 547 | 55.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 676 | 55.35 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 685 | 55.36 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 708 | 55.39 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 750 | 55.43 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 823 | 55.51 | humidity | 90 | 1440 | < th | dose dependent | sin | 23 | NA |
| 848 | 55.54 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 859 | 55.55 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 986 | 55.68 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |