BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0411900 Os08g0411900|J100064C10
(288 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07040.1 | chr3:2226244-2229024 REVERSE LENGTH=927 62 4e-10
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 49 2e-06
AT1G50180.1 | chr1:18584235-18587136 FORWARD LENGTH=858 48 6e-06
>AT3G07040.1 | chr3:2226244-2229024 REVERSE LENGTH=927
Length = 926
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 114/268 (42%), Gaps = 32/268 (11%)
Query: 35 HSGIASLRDELRSMEAALEDLSQ------LEEPSQQVKEWMHQLRELSYDIEDCIDVFVQ 88
H I ++ EL M++ LED + +Q + ++ R+L+Y IED +D F
Sbjct: 28 HGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDILDEFGY 87
Query: 89 HLGQDDAHDGLISKIIGWIRTMKVCHHTAGQIGKLKEHAVEISDRRKRLKLDIVPSSSAY 148
H+ I + + R M H A ++G + ISD KR ++
Sbjct: 88 HI-HGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENYQAALL 146
Query: 149 VPID----------PRLSAFFEEAGRIIGIDVPRDELIEWVTSDTNKRRXXXXXXXXXXX 198
PID S FF E ++GID P+ +LI + S +R
Sbjct: 147 PPIDDGDAKWVNNISESSLFFSE-NSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSG 205
Query: 199 KTTLANQVY--QKVRSRFSWTVFVSVSRSPNIIRILSDILSNIIKTNNTTSDDQKQLMQR 256
KTTL+ ++ Q VR F +V++S+S ++ D+ +IK +D Q
Sbjct: 206 KTTLSANIFKSQSVRRHFESYAWVTISKS----YVIEDVFRTMIKEFYKEADTQ------ 255
Query: 257 IKEYLNRKSLEYHELVNMTREFLENKRY 284
I L SL Y ELV E+L++KRY
Sbjct: 256 IPAEL--YSLGYRELVEKLVEYLQSKRY 281
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 116/236 (49%), Gaps = 21/236 (8%)
Query: 38 IASLRDELRSMEAALEDLSQLEEPSQQVKEWMHQLRELSYDIEDCIDVFVQHLGQDDAHD 97
+ L+ EL+ M++ L+D + + ++ ++ + LREL Y+ ED I V Q DD ++
Sbjct: 31 LEDLQSELKYMQSFLKDAERQKRTNETLRTLVADLRELVYEAED-ILVDCQLADGDDGNE 89
Query: 98 GLISKIIGWIRTMKVCHHTAGQIGKLKEHA--VEISDRRKRLKLDIVPSSSAYVPID--- 152
S W+ + H A + K+ EI++R ++K + P P +
Sbjct: 90 QRSSN--AWLSRL----HPARVPLQYKKSKRLQEINERITKIKSQVEPYFEFITPSNVGR 143
Query: 153 ----PRLSAFFEEAGRIIGIDVPRDELIEWV-TSDTNKRRXXXXXXXXXXXKTTLANQVY 207
R S+ + +++G++ + ++ EW+ S+ ++ KTT+A +V+
Sbjct: 144 DNGTDRWSSPVYDHTQVVGLEGDKRKIKEWLFRSNDSQLLIMAFVGMGGLGKTTIAQEVF 203
Query: 208 --QKVRSRFSWTVFVSVSRSPNIIRILSDILSNIIKTNNTTSDDQKQLMQRIKEYL 261
+++ RF ++VSVS++ +I+ IL N+ + + DD L+++I++YL
Sbjct: 204 NDKEIEHRFERRIWVSVSQTFTEEQIMRSILRNL--GDASVGDDIGTLLRKIQQYL 257
>AT1G50180.1 | chr1:18584235-18587136 FORWARD LENGTH=858
Length = 857
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 19/241 (7%)
Query: 38 IASLRDELRSMEAALEDLSQLEEPSQQVKEWMHQLRELSYDIEDCIDVFVQHLGQDDAHD 97
+ L+DEL+ + L+D + + S++V+ W+ +RE SYD ED ++ F +
Sbjct: 31 VKQLQDELKRLNCFLKDADEKQHESERVRNWVAGIREASYDAEDILEAFFLK-AESRKQK 89
Query: 98 GL--ISKIIGWIRTMKVCHHTAG--------QIGKLKEHAVEISDRRKRLKLDIVPSSSA 147
G+ + + + I V H+ G ++ K+ ++ + + + S S
Sbjct: 90 GMKRVLRRLACILNEAVSLHSVGSEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSL 149
Query: 148 YVPIDPRLSAFFEEAGRIIGIDVPRDELIEWVTSDTNKRRXXXXXXXXXXXKTTLANQVY 207
+ R S + ++G++ ++L+ + S K R KTTLA Q++
Sbjct: 150 R---EQRQSFPYVVEHNLVGLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQIF 206
Query: 208 --QKVRSRFSWTVFVSVSRSPNIIRILSDILSNI-IKTNN--TTSDDQKQLMQRIKEYLN 262
KVR F +V VS+ + DI N+ K N S +QL + + +L
Sbjct: 207 HHHKVRRHFDRFAWVYVSQDCRRRHVWQDIFLNLSYKDENQRILSLRDEQLGEELHRFLK 266
Query: 263 R 263
R
Sbjct: 267 R 267
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,460,805
Number of extensions: 210785
Number of successful extensions: 820
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 7
Length of query: 288
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 190
Effective length of database: 8,419,801
Effective search space: 1599762190
Effective search space used: 1599762190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)