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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0406600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0451) R2 : 0.322
β1 : -1.18 (0.164) R2dD : 0.087 R2D : 0.111
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.366 (0.25) R2dE : 0.00387 R2E : 0.0225
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.74 (0.952) R2dD*E : 0.188 R2D*E : 0.223
γ1 : -0.0226 (0.0986) R2dN8 : 0.000143 R2N8 : -0.00838
σ : 0.796
deviance : 292.25
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 5.152
memory length : 720
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 13.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
290.41 0.801 3 -1.18 0.21 0.439 0.111 -9.7 -0.0333 8.13 5.296 722 16.9 13
332.65 0.849 3.06 -1.35 0.174 1.64 0.782 -- -0.125 8.18 7.79 637 17.3 12.5
290.07 0.793 3 -1.17 0.202 0.43 -- -9.6 -0.0242 7.94 5.12 720 17 13.1
312.56 0.823 3.06 -0.531 0.203 3.11 -- -- -0.0106 8.27 8.261 640 17.4 12.5
292.25 0.796 3 -1.18 -- 0.366 -- -9.74 -0.0226 -- 5.152 720 17 13.1
364.91 0.896 3.17 -1.54 0.0509 -- -1.08 -- -0.337 1.43 -- -- -- --
367.47 0.898 3.16 -1.51 0.21 -- -- -- -0.335 6.25 -- -- -- --
314.31 0.826 3.08 -0.494 -- 3.28 -- -- 0.00395 -- 8.399 640 17.4 12.5
317.19 0.829 3.07 -- 0.205 3.71 -- -- 0.0438 7.87 8.273 640 17.4 12.5
369.76 0.899 3.16 -1.5 -- -- -- -- -0.33 -- -- -- -- --
427.22 0.967 3.12 -- 0.19 -- -- -- -0.167 6.68 -- -- -- --
319.38 0.832 3.08 -- -- 3.76 -- -- 0.0571 -- 8.344 640 17.4 12.5
429.11 0.967 3.12 -- -- -- -- -- -0.164 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 300.64 radiation 1 720 > th dose dependent rect. 17 13
2 301.87 radiation 40 1440 < th dose independent rect. 15 15
3 302.04 radiation 40 1440 < th dose independent rect. 15 9
4 302.13 radiation 40 4320 < th dose independent rect. 15 17
5 302.20 radiation 40 1440 < th dose independent rect. 15 6
12 302.72 radiation 40 1440 < th dose independent rect. 15 12
17 303.98 wind 9 43200 > th dose dependent rect. 22 3
18 304.24 radiation 40 1440 < th dose independent rect. 15 2
23 305.07 wind 9 43200 > th dose dependent rect. 22 5
24 305.41 radiation 10 720 < th dose independent rect. 16 8
25 305.62 wind 7 43200 > th dose dependent rect. 6 2
26 305.70 atmosphere 995 43200 < th dose dependent rect. 11 4
28 305.87 wind 9 43200 > th dose dependent rect. 18 17
29 305.99 atmosphere 995 43200 < th dose dependent rect. 9 6
30 306.02 wind 7 43200 > th dose independent rect. 7 1
38 306.41 wind 9 43200 > th dose dependent rect. 18 15
41 306.72 wind 9 43200 > th dose independent rect. 23 2
44 306.85 radiation 10 1440 < th dose independent rect. 17 2
52 307.00 radiation 10 1440 < th dose independent rect. 17 11
55 307.06 radiation 10 1440 < th dose independent rect. 17 13
56 307.09 wind 7 43200 < th dose independent rect. 7 1
58 307.32 atmosphere 995 43200 > th dose independent rect. 8 6
65 307.67 wind 9 43200 > th dose dependent sin 9 NA
70 307.85 atmosphere 995 43200 < th dose independent rect. 7 7
72 307.87 wind 7 43200 > th dose dependent rect. 5 5
84 308.49 atmosphere 995 43200 > th dose independent rect. 13 1
98 308.70 atmosphere 995 43200 < th dose independent rect. 11 3
100 308.77 atmosphere 995 43200 < th dose independent rect. 12 1
103 308.77 atmosphere 995 43200 < th dose dependent rect. 12 1
139 309.26 wind 9 43200 > th dose dependent rect. 9 2
141 309.27 wind 9 43200 > th dose dependent rect. 22 13
145 309.33 wind 9 43200 > th dose independent rect. 9 1
178 309.92 wind 9 43200 > th dose dependent rect. 24 11
179 309.92 wind 9 43200 > th dose dependent rect. 22 16
185 309.99 wind 9 43200 > th dose dependent rect. 2 9
199 310.31 wind 9 43200 > th dose independent rect. 18 16
203 310.36 atmosphere 995 43200 > th dose independent rect. 9 2
205 310.37 wind 9 43200 > th dose independent rect. 6 5
242 310.65 wind 9 43200 > th dose dependent rect. 5 9
257 310.74 wind 9 43200 > th dose dependent rect. 2 12
277 310.85 temperature 10 43200 < th dose dependent rect. 4 2
283 310.87 radiation 30 4320 > th dose dependent rect. 15 18
284 310.88 temperature 10 43200 > th dose independent rect. 4 1
287 310.91 temperature 10 43200 < th dose independent rect. 4 2
311 311.12 temperature 10 43200 < th dose dependent rect. 3 8
322 311.13 temperature 10 43200 < th dose dependent rect. 3 5
326 311.15 wind 9 43200 < th dose independent rect. 23 2
327 311.17 atmosphere 995 43200 < th dose dependent sin 23 NA
334 311.26 temperature 10 43200 < th dose dependent rect. 1 6
380 311.49 radiation 40 1440 < th dose independent sin 13 NA
383 311.52 wind 9 43200 > th dose dependent rect. 14 21
385 311.55 wind 9 43200 < th dose independent rect. 9 1
393 311.64 temperature 10 43200 > th dose independent rect. 2 17
405 311.70 atmosphere 995 43200 < th dose independent rect. 7 1
415 311.70 atmosphere 995 43200 < th dose dependent rect. 7 1
431 311.71 temperature 10 43200 < th dose dependent sin 1 NA
450 311.74 temperature 10 43200 > th dose independent rect. 2 10
488 311.79 wind 9 43200 < th dose independent rect. 5 6
490 311.79 temperature 10 43200 > th dose independent rect. 2 15
494 311.82 temperature 10 43200 > th dose independent rect. 2 12
508 311.94 wind 9 43200 < th dose independent rect. 7 4
537 312.04 temperature 10 43200 > th dose independent rect. 2 8
545 312.10 wind 9 43200 < th dose independent rect. 18 16
584 312.28 radiation 10 720 < th dose independent rect. 15 16
591 312.31 wind 9 43200 > th dose independent rect. 23 12
597 312.37 radiation 40 4320 < th dose independent rect. 5 4
600 312.38 radiation 40 4320 < th dose independent rect. 18 15
625 312.52 radiation 40 4320 < th dose independent rect. 22 11
653 312.75 wind 9 43200 > th dose independent rect. 2 9
673 312.83 radiation 1 720 > th dose dependent rect. 17 2
683 312.84 wind 9 43200 > th dose independent rect. 23 4
718 313.20 wind 9 43200 < th dose independent rect. 24 11
724 313.24 temperature 10 43200 < th dose independent sin 3 NA
782 313.47 humidity 80 43200 > th dose dependent rect. 4 8
812 313.65 temperature 10 43200 > th dose independent sin 3 NA
835 313.84 temperature 15 43200 < th dose dependent rect. 6 1
841 313.89 wind 9 43200 < th dose independent rect. 2 9
892 314.26 wind 9 43200 > th dose dependent rect. 22 22
928 314.47 radiation 30 1440 > th dose dependent rect. 15 2
980 314.70 radiation 10 1440 < th dose independent sin 13 NA
999 314.87 wind 9 43200 > th dose dependent rect. 5 15