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Os08g0376200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nudix hydrolase 15, mitochondrial precursor (EC 3.6.1.-) (AtNUDT15).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.17 (0.0214) R2 : 0.447
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.777 (0.0511) R2dC : 0.282 R2C : 0.237
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.521 (0.0451) R2dN8 : 0.21 R2N8 : 0.165
σ : 0.404
deviance : 74.54
__
_____
C
peak time of C : 23.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.7 0.344 9.22 -0.0682 0.824 0.463 -0.15 -1.27 0.395 23.6 20.59 242 -- --
56.47 0.35 9.2 0.0581 0.776 0.771 0.166 -- 0.386 23.4 18.8 2032 -- --
53.8 0.342 9.21 -0.058 0.824 0.465 -- -1.24 0.395 23.6 20.6 244 -- --
53.84 0.342 9.19 -0.095 0.75 1.22 -- -- 0.383 23.2 18.4 1878 -- --
88.5 0.438 9.21 -0.139 -- 0.633 -- -1.07 0.347 -- 20.7 731 -- --
71.48 0.396 9.16 0.342 0.774 -- 0.0764 -- 0.559 23.4 -- -- -- --
71.5 0.396 9.16 0.339 0.773 -- -- -- 0.559 23.4 -- -- -- --
86.93 0.434 9.19 -0.164 -- 1.35 -- -- 0.359 -- 18.1 2248 -- --
53.73 0.341 9.2 -- 0.773 1.37 -- -- 0.401 23.3 18.2 1803 -- --
108.98 0.488 9.14 0.359 -- -- -- -- 0.567 -- -- -- -- --
74.54 0.404 9.17 -- 0.777 -- -- -- 0.521 23.4 -- -- -- --
87.42 0.435 9.18 -- -- 1.24 -- -- 0.392 -- 18.09 2243 -- --
112.38 0.495 9.15 -- -- -- -- -- 0.527 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.35 humidity 90 14400 > th dose dependent rect. 5 1
4 50.99 humidity 90 14400 > th dose dependent rect. 1 14
34 51.63 humidity 90 14400 > th dose dependent rect. 3 6
38 51.66 humidity 90 14400 > th dose dependent sin 5 NA
47 51.76 humidity 60 43200 < th dose dependent rect. 7 2
50 51.84 humidity 90 14400 < th dose independent rect. 23 2
69 52.13 humidity 90 14400 < th dose independent rect. 23 8
72 52.14 humidity 60 43200 < th dose independent rect. 7 2
73 52.14 humidity 60 43200 < th dose dependent rect. 20 13
77 52.18 humidity 50 43200 > th dose independent rect. 20 14
89 52.33 humidity 90 14400 > th dose independent rect. 5 2
104 52.50 humidity 90 14400 > th dose independent rect. 23 14
107 52.54 humidity 90 14400 > th dose independent rect. 23 8
110 52.55 humidity 50 43200 > th dose independent rect. 7 3
115 52.57 humidity 60 43200 < th dose independent rect. 20 13
119 52.58 humidity 50 43200 > th dose independent rect. 5 5
121 52.58 humidity 90 14400 > th dose independent rect. 23 16
122 52.58 humidity 50 43200 < th dose independent rect. 20 16
133 52.63 radiation 30 4320 < th dose independent rect. 16 16
152 52.71 radiation 20 14400 > th dose independent rect. 6 1
172 52.75 humidity 50 43200 < th dose independent sin 8 NA
183 52.77 humidity 50 43200 < th dose independent rect. 5 7
190 52.79 humidity 50 43200 > th dose independent sin 9 NA
244 52.91 humidity 50 43200 > th dose dependent rect. 19 3
290 53.04 humidity 90 14400 < th dose independent rect. 22 5
291 53.04 humidity 50 43200 > th dose dependent rect. 20 1
307 53.08 humidity 90 43200 < th dose dependent rect. 19 3
314 53.10 humidity 50 43200 < th dose independent rect. 19 20
322 53.12 humidity 50 43200 > th dose independent rect. 19 20
358 53.18 humidity 90 43200 < th dose dependent rect. 20 1
408 53.25 radiation 10 14400 < th dose dependent rect. 24 5
441 53.29 humidity 50 43200 < th dose dependent rect. 13 23
457 53.32 humidity 50 43200 > th dose independent rect. 4 11
470 53.33 humidity 80 43200 < th dose independent rect. 6 1
483 53.33 radiation 20 14400 > th dose dependent rect. 6 1
498 53.33 humidity 50 43200 < th dose dependent rect. 20 20
507 53.34 humidity 50 43200 < th dose dependent rect. 7 9
559 53.38 humidity 50 43200 < th dose dependent sin 2 NA
561 53.38 humidity 50 43200 < th dose dependent rect. 10 5
587 53.38 humidity 50 43200 < th dose dependent rect. 17 23
595 53.39 wind 7 43200 > th dose dependent rect. 18 2
596 53.39 humidity 50 43200 < th dose dependent rect. 13 2
605 53.40 temperature 20 1440 > th dose independent rect. 5 4
611 53.40 humidity 90 43200 < th dose dependent rect. 17 8
613 53.41 humidity 90 14400 > th dose independent rect. 23 2
616 53.41 humidity 60 43200 < th dose dependent sin 8 NA
619 53.41 humidity 50 43200 < th dose dependent no NA NA
622 53.41 humidity 50 43200 < th dose dependent rect. 7 15
665 53.41 humidity 50 43200 < th dose dependent rect. 10 23
766 53.45 temperature 20 1440 < th dose independent rect. 5 4
810 53.48 humidity 90 14400 > th dose independent sin 7 NA
845 53.50 humidity 50 43200 < th dose independent rect. 13 23
861 53.51 humidity 50 43200 < th dose independent rect. 11 1
879 53.52 wind 7 43200 > th dose independent rect. 18 2
882 53.52 temperature 20 270 > th dose independent rect. 9 23
885 53.52 humidity 50 43200 < th dose dependent rect. 11 1
925 53.54 humidity 90 14400 > th dose dependent rect. 10 21
945 53.56 humidity 50 43200 < th dose dependent rect. 13 16
950 53.57 humidity 50 43200 < th dose independent no NA NA
952 53.57 humidity 50 43200 < th dose independent rect. 4 18
974 53.57 humidity 50 43200 < th dose dependent rect. 13 9
984 53.58 humidity 50 43200 > th dose independent rect. 13 23
987 53.58 temperature 20 1440 < th dose dependent rect. 2 3
996 53.59 humidity 70 43200 > th dose independent rect. 18 21
998 53.59 humidity 50 43200 < th dose independent rect. 7 23
999 53.59 humidity 50 43200 < th dose independent rect. 11 23