BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0376200 Os08g0376200|AK101135
         (163 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28960.1  | chr1:10110135-10111607 REVERSE LENGTH=294          180   2e-46
AT2G33980.1  | chr2:14356786-14359840 REVERSE LENGTH=303          166   4e-42
AT5G45940.1  | chr5:18629665-18630597 REVERSE LENGTH=223          154   3e-38

>AT1G28960.1 | chr1:10110135-10111607 REVERSE LENGTH=294
          Length = 293

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 106/155 (68%)

Query: 9   SGEVALPXXXXXXXXXXXXXXXLREAKEEIGLDPSLVTVVASLEHFLSKHLLVVVPIVGI 68
           SGEV+LP                REA+EEIGLDPSLV VV SLE FLSKHLL V+P++GI
Sbjct: 131 SGEVSLPGGKAEEDDKDDGMTATREAEEEIGLDPSLVDVVTSLEPFLSKHLLRVIPVIGI 190

Query: 69  LSDIEAFKPVLNVDEVDDIFDVPLEMFLKDENRTSEEREKMGQTFTIHYFNYEKENQKYL 128
           L D   F P+ N  EV+ +FD PLEMFLKDENR SEERE MG+ + IHYF+Y   ++ Y+
Sbjct: 191 LRDKNKFNPIPNPGEVEAVFDAPLEMFLKDENRRSEEREWMGEKYLIHYFDYRTGDKDYM 250

Query: 129 IWGLTARILIHAASVVYQRPPDFPERRVHFNLPKF 163
           IWGLTA ILI AASV Y+RPP F E+   F  PK 
Sbjct: 251 IWGLTAGILIRAASVTYERPPAFIEQCPKFKYPKM 285



>AT2G33980.1 | chr2:14356786-14359840 REVERSE LENGTH=303
          Length = 302

 Score =  166 bits (421), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/155 (54%), Positives = 105/155 (67%)

Query: 9   SGEVALPXXXXXXXXXXXXXXXLREAKEEIGLDPSLVTVVASLEHFLSKHLLVVVPIVGI 68
           SGEV+LP                REA+EEIGLDPSLV VVA LE FLS+HLL V+P+VGI
Sbjct: 105 SGEVSLPGGKAEEHDKDDGITATREAEEEIGLDPSLVDVVAFLEPFLSQHLLRVIPVVGI 164

Query: 69  LSDIEAFKPVLNVDEVDDIFDVPLEMFLKDENRTSEEREKMGQTFTIHYFNYEKENQKYL 128
           L D +AF P  N  EV+ + D P EMFLKDENR SEE + MG+   +H+F+Y+  +  Y+
Sbjct: 165 LWDRKAFNPTPNPAEVEAVLDAPFEMFLKDENRRSEEFDWMGEKHLVHFFDYKTGDSDYV 224

Query: 129 IWGLTARILIHAASVVYQRPPDFPERRVHFNLPKF 163
           IWGLTARILI AA+VVYQRPP F E++ +    K 
Sbjct: 225 IWGLTARILIRAATVVYQRPPAFIEQKPNLKYSKM 259



>AT5G45940.1 | chr5:18629665-18630597 REVERSE LENGTH=223
          Length = 222

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 104/151 (68%), Gaps = 2/151 (1%)

Query: 10  GEVALPXXXXXXXXXXXXXXXLREAKEEIGLDPSLVTVVASLEHFLSKHLLVVVPIVGIL 69
           GEVALP               LREA+EEIGLDPSLVT+++ LE F++K  + V P++G L
Sbjct: 67  GEVALPGGKRDQEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFL 126

Query: 70  SDIEAFKPVLNVDEVDDIFDVPLEMFLKDENRTSEEREKMGQTFTIHYFNYEKENQK--Y 127
            D +AFK + N  EV++IFDVPLEMFLKD NR +EERE  G+ + + YF+Y  E+++  +
Sbjct: 127 HDKKAFKQLPNPAEVEEIFDVPLEMFLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSF 186

Query: 128 LIWGLTARILIHAASVVYQRPPDFPERRVHF 158
           +IW LTA ILI  AS+VYQR P+F ER+  F
Sbjct: 187 IIWALTAGILIRVASIVYQRLPEFQERKPSF 217



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,338,713
Number of extensions: 129527
Number of successful extensions: 311
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)