FiT-DB / Search/ Help/ Sample detail

Os08g0374000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bet v I allergen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0421) R2 : 0.715
β1 : -3.31 (0.16) R2dD : 0.305 R2D : 0.055
β2 : 1.61 (0.1) R2dC : 0.168 R2C : 0.16
β3 : -1.57 (0.152) R2dE : 0.0691 R2E : 0.0126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.41 (0.684) R2dD*E : 0.0807 R2D*E : -0.0186
γ1 : -1.71 (0.0896) R2dN8 : 0.314 R2N8 : 0.148
σ : 0.782
deviance : 281.82
__
_____
C
peak time of C : 11.5
E
wheather : radiation
threshold : 49.71
memory length : 2829
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.22
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
281.05 0.788 10.8 -3.36 1.62 -1.67 0.502 -7.65 -1.7 11.5 48.53 2829 7.22 --
346.72 0.867 10.8 -2.84 1.6 -1.76 0.647 -- -1.71 11.6 50 2733 8.08 --
281.82 0.782 10.8 -3.31 1.61 -1.57 -- -7.41 -1.71 11.5 49.71 2829 7.22 --
348.27 0.869 10.8 -2.8 1.61 -1.73 -- -- -1.7 11.6 50 2737 8.23 --
443.42 0.981 10.9 -3.37 -- -1.79 -- -8.04 -1.79 -- 50.12 2841 7.08 --
421.29 0.962 10.8 -2.73 1.82 -- 0.73 -- -1.68 11.7 -- -- -- --
423.59 0.964 10.8 -2.7 1.81 -- -- -- -1.68 11.7 -- -- -- --
474.77 1.01 10.8 -2.78 -- -2.28 -- -- -1.3 -- 40 2484 8.47 --
544.22 1.09 10.8 -- 1.75 -1.76 -- -- -1.44 11.7 50 2733 8.76 --
630.21 1.17 10.9 -2.76 -- -- -- -- -1.7 -- -- -- -- --
616.36 1.16 10.8 -- 1.85 -- -- -- -1.38 11.8 -- -- -- --
584.5 1.13 10.7 -- -- -2.7 -- -- -1.06 -- -4.673 908 8.9 --
830.68 1.35 10.8 -- -- -- -- -- -1.4 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.80 wind 1.0 14400 > th dose independent rect. 20 3
2 281.39 wind 1.0 14400 < th dose dependent rect. 20 3
5 283.40 temperature 25.0 14400 > th dose dependent rect. 4 2
9 285.44 radiation 40.0 4320 > th dose dependent rect. 13 1
13 288.47 temperature 20.0 1440 > th dose dependent rect. 7 1
15 288.79 temperature 20.0 1440 > th dose dependent rect. 6 3
17 289.53 radiation 20.0 4320 < th dose dependent rect. 17 14
18 289.87 radiation 1.0 4320 > th dose independent rect. 17 13
23 290.27 temperature 30.0 1440 < th dose dependent rect. 7 1
24 290.33 radiation 1.0 14400 > th dose dependent rect. 17 1
43 291.09 radiation 1.0 4320 < th dose independent rect. 18 12
47 291.21 radiation 40.0 4320 > th dose dependent rect. 13 19
48 291.22 radiation 40.0 4320 > th dose dependent rect. 13 3
65 291.25 radiation 10.0 14400 < th dose dependent rect. 17 1
69 291.35 radiation 40.0 14400 < th dose dependent rect. 17 1
75 291.53 radiation 1.0 4320 < th dose dependent rect. 18 12
76 291.62 radiation 1.0 4320 > th dose dependent rect. 17 14
79 291.71 temperature 25.0 14400 > th dose independent rect. 4 1
84 292.15 wind 1.0 14400 < th dose independent rect. 20 3
85 292.16 radiation 10.0 14400 < th dose dependent rect. 17 8
86 292.17 radiation 10.0 14400 < th dose dependent rect. 17 10
97 292.24 radiation 40.0 14400 < th dose dependent rect. 17 10
134 292.68 radiation 1.0 43200 > th dose independent rect. 18 1
160 293.10 radiation 30.0 14400 > th dose independent rect. 16 16
161 293.18 radiation 20.0 4320 < th dose dependent rect. 21 10
164 293.23 radiation 20.0 4320 < th dose dependent rect. 24 7
165 293.24 radiation 1.0 1440 < th dose dependent rect. 18 1
167 293.29 radiation 1.0 1440 < th dose dependent rect. 18 9
170 293.32 radiation 40.0 4320 < th dose dependent rect. 21 10
178 293.43 radiation 20.0 4320 < th dose dependent rect. 5 2
179 293.44 radiation 40.0 4320 < th dose dependent rect. 24 7
198 293.82 radiation 40.0 14400 > th dose independent rect. 15 18
263 294.72 wind 7.0 43200 < th dose independent rect. 9 2
307 295.18 radiation 1.0 1440 < th dose dependent rect. 18 4
328 295.50 wind 7.0 43200 < th dose independent rect. 3 10
330 295.52 radiation 1.0 43200 < th dose independent rect. 18 9
331 295.53 radiation 1.0 43200 < th dose independent rect. 18 1
348 295.67 radiation 1.0 43200 < th dose independent rect. 18 4
349 295.67 wind 5.0 43200 > th dose dependent rect. 24 14
359 295.78 radiation 1.0 4320 > th dose independent rect. 17 2
398 296.00 wind 5.0 43200 > th dose dependent rect. 2 12
399 296.02 radiation 1.0 4320 > th dose dependent rect. 5 2
421 296.22 radiation 30.0 14400 > th dose independent rect. 7 1
445 296.53 radiation 30.0 14400 > th dose dependent rect. 15 2
463 296.62 wind 7.0 43200 < th dose independent rect. 21 17
475 296.87 precipitation 0.1 43200 > th dose dependent rect. 20 15
476 296.88 wind 7.0 43200 > th dose independent rect. 10 1
484 297.10 wind 7.0 43200 > th dose independent rect. 3 10
493 297.26 radiation 1.0 43200 < th dose dependent rect. 2 3
496 297.29 temperature 20.0 720 > th dose dependent rect. 17 19
503 297.35 radiation 1.0 43200 < th dose dependent rect. 4 1
511 297.42 wind 7.0 43200 < th dose independent rect. 23 15
532 297.76 temperature 25.0 14400 < th dose independent rect. 4 1
560 297.98 wind 5.0 43200 > th dose dependent sin 6 NA
563 298.04 wind 7.0 43200 > th dose independent rect. 21 17
565 298.06 wind 1.0 14400 < th dose dependent rect. 16 8
579 298.26 radiation 10.0 14400 < th dose independent rect. 16 1
582 298.29 precipitation 0.1 43200 > th dose dependent rect. 20 11
607 298.50 precipitation 0.1 43200 > th dose dependent rect. 20 22
632 298.53 precipitation 0.1 43200 > th dose independent rect. 20 15
639 298.62 precipitation 0.1 43200 < th dose independent rect. 20 15
640 298.62 precipitation 0.1 43200 < th dose dependent rect. 20 15
671 298.78 temperature 25.0 1440 > th dose dependent rect. 21 14
676 298.82 wind 5.0 43200 > th dose dependent rect. 10 1
691 299.02 wind 7.0 43200 < th dose independent sin 7 NA
731 299.42 radiation 30.0 14400 < th dose independent rect. 15 3
732 299.43 radiation 30.0 14400 < th dose independent rect. 15 12
733 299.43 radiation 10.0 4320 > th dose dependent rect. 16 16
737 299.44 temperature 30.0 14400 > th dose dependent rect. 17 1
774 299.60 radiation 30.0 14400 < th dose independent rect. 15 7
776 299.60 precipitation 0.1 43200 < th dose independent rect. 17 18
777 299.60 precipitation 0.1 43200 < th dose dependent rect. 17 18
781 299.62 precipitation 0.1 43200 > th dose independent rect. 17 18
782 299.63 radiation 1.0 4320 < th dose independent rect. 5 1
786 299.66 wind 5.0 43200 > th dose independent sin 6 NA
791 299.71 radiation 1.0 4320 < th dose independent rect. 21 9
814 299.75 temperature 30.0 4320 > th dose dependent rect. 17 17
820 299.78 radiation 1.0 4320 < th dose independent rect. 24 6
829 299.88 temperature 30.0 4320 < th dose independent rect. 18 17
852 300.00 radiation 1.0 43200 < th dose dependent rect. 21 8
865 300.09 precipitation 0.1 43200 < th dose independent rect. 20 11
866 300.09 precipitation 0.1 43200 < th dose dependent rect. 20 11
891 300.16 radiation 1.0 14400 > th dose independent rect. 4 3
906 300.18 precipitation 0.1 43200 > th dose independent rect. 20 11
908 300.19 precipitation 0.1 43200 > th dose independent rect. 6 4
928 300.32 precipitation 0.1 43200 > th dose dependent rect. 6 4
938 300.38 temperature 25.0 1440 < th dose independent rect. 6 3
945 300.43 radiation 1.0 4320 > th dose independent rect. 5 1
954 300.46 temperature 30.0 4320 > th dose independent rect. 18 17
974 300.57 temperature 30.0 1440 < th dose independent rect. 10 1
999 300.59 wind 5.0 43200 > th dose dependent rect. 8 5