Os08g0366100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein bridging factor 1) (MBF1).
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Os08g0366100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein bridging factor 1) (MBF1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.14 | 0.286 | 16 | -0.253 | 0.764 | 0.61 | 0.402 | -0.35 | 0.136 | 17.1 | 21.3 | 1002 | -- | -- |
| 37.47 | 0.285 | 16 | -0.167 | 0.762 | 0.636 | 0.414 | -- | 0.155 | 17.1 | 21.21 | 1001 | -- | -- |
| 37.55 | 0.285 | 16 | -0.258 | 0.768 | 0.614 | -- | -0.362 | 0.136 | 17.1 | 21.3 | 1006 | -- | -- |
| 37.89 | 0.287 | 16 | -0.169 | 0.766 | 0.641 | -- | -- | 0.156 | 17.1 | 21.21 | 1001 | -- | -- |
| 64.5 | 0.374 | 16 | -0.196 | -- | 0.641 | -- | -0.117 | 0.135 | -- | 21.14 | 497 | -- | -- |
| 50.15 | 0.332 | 15.9 | 0.0858 | 0.758 | -- | 0.479 | -- | 0.328 | 17.5 | -- | -- | -- | -- |
| 50.71 | 0.333 | 15.9 | 0.0838 | 0.762 | -- | -- | -- | 0.33 | 17.6 | -- | -- | -- | -- |
| 64.53 | 0.374 | 16 | -0.179 | -- | 0.676 | -- | -- | 0.15 | -- | 20.9 | 463 | -- | -- |
| 38.55 | 0.289 | 16 | -- | 0.768 | 0.591 | -- | -- | 0.186 | 17.1 | 21.21 | 1001 | -- | -- |
| 80.86 | 0.42 | 15.9 | 0.059 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 50.9 | 0.334 | 15.9 | -- | 0.76 | -- | -- | -- | 0.32 | 17.6 | -- | -- | -- | -- |
| 65.31 | 0.376 | 16 | -- | -- | 0.636 | -- | -- | 0.182 | -- | 20.9 | 450 | -- | -- |
| 80.95 | 0.42 | 15.9 | -- | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 2 | 35.84 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 3 | 35.89 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 16 | 36.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 27 | 37.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 32 | 37.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 34 | 37.77 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 44 | 37.97 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 11 |
| 48 | 38.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 50 | 38.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 56 | 38.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 91 | 38.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 118 | 38.45 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 18 |
| 138 | 38.51 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 169 | 38.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 203 | 38.76 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 20 |
| 204 | 38.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 208 | 38.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 209 | 38.80 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 218 | 38.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 230 | 38.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 237 | 38.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 252 | 38.90 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 257 | 38.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 278 | 38.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 10 |
| 284 | 38.96 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 311 | 38.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 345 | 39.05 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 347 | 39.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 359 | 39.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 366 | 39.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 395 | 39.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 398 | 39.13 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 18 |
| 405 | 39.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 484 | 39.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 530 | 39.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 545 | 39.28 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 563 | 39.30 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 663 | 39.39 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 700 | 39.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 731 | 39.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 743 | 39.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 770 | 39.45 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 799 | 39.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 831 | 39.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 871 | 39.53 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 878 | 39.54 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 898 | 39.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 912 | 39.57 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 946 | 39.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 972 | 39.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |