BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0366100 Os08g0366100|AK120339
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G42680.1 | chr2:17774972-17776116 FORWARD LENGTH=143 241 1e-64
AT3G58680.1 | chr3:21707367-21708625 FORWARD LENGTH=143 239 3e-64
AT3G24500.1 | chr3:8918755-8919201 FORWARD LENGTH=149 142 6e-35
>AT2G42680.1 | chr2:17774972-17776116 FORWARD LENGTH=143
Length = 142
Score = 241 bits (614), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/142 (81%), Positives = 130/142 (91%)
Query: 1 MAGIGPIRQDWEPVVVRKKAPTAAAKKDEKAVNAARRSGAEIETMKKYNAGTNKAASSGT 60
MAGIGPI QDWEPVV+RKK AAAK+DEK VNAARRSGA+IET++K+NAGTNKAASSGT
Sbjct: 1 MAGIGPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGT 60
Query: 61 SLNTKRLDDDTESLAHERVSSDLKKNLMQARLDKKMTQAQLAQMINEKPQVIQEYESGKA 120
SLNTK LDDDTE+L HERV ++LKK +MQAR DKK+TQ+QLAQ+INEKPQVIQEYESGKA
Sbjct: 61 SLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKA 120
Query: 121 IPNQQIIGKLERALGTKLRGKK 142
IPNQQI+ KLERALG KLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142
>AT3G58680.1 | chr3:21707367-21708625 FORWARD LENGTH=143
Length = 142
Score = 239 bits (610), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/142 (79%), Positives = 133/142 (93%)
Query: 1 MAGIGPIRQDWEPVVVRKKAPTAAAKKDEKAVNAARRSGAEIETMKKYNAGTNKAASSGT 60
MAGIGPI QDWEPVV+RK+AP AAAK+DEK VNAARRSGA+IET++K+NAG+NKAASSGT
Sbjct: 1 MAGIGPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGT 60
Query: 61 SLNTKRLDDDTESLAHERVSSDLKKNLMQARLDKKMTQAQLAQMINEKPQVIQEYESGKA 120
SLNTK+LDDDTE+L+H+RV ++LKK +MQAR +KK+TQ+QLA +INEKPQVIQEYESGKA
Sbjct: 61 SLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKA 120
Query: 121 IPNQQIIGKLERALGTKLRGKK 142
IPNQQI+ KLERALG KLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142
>AT3G24500.1 | chr3:8918755-8919201 FORWARD LENGTH=149
Length = 148
Score = 142 bits (358), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 103/139 (74%), Gaps = 2/139 (1%)
Query: 5 GPIRQDWEPVVVRKKAPTAAAKKDEKAVNAARRSGAEIETMKKYNAGTNKAASSGTS--L 62
G + QDWEPVV+ K + +D KAVNAA R+G ++T+KK++AG+NK S +
Sbjct: 7 GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVI 66
Query: 63 NTKRLDDDTESLAHERVSSDLKKNLMQARLDKKMTQAQLAQMINEKPQVIQEYESGKAIP 122
NTK+L+++TE A +RV ++++ + +ARL+KKM+QA LA+ INE+ QV+QEYE+GKA+P
Sbjct: 67 NTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVP 126
Query: 123 NQQIIGKLERALGTKLRGK 141
NQ ++ K+E+ LG KLRGK
Sbjct: 127 NQAVLAKMEKVLGVKLRGK 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.123 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,648,277
Number of extensions: 91467
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 3
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 106 (45.4 bits)