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Os08g0355400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0505) R2 : 0.717
β1 : -5.93 (0.216) R2dD : 0.867 R2D : 0.0516
β2 : 1.69 (0.114) R2dC : 0.138 R2C : 0.114
β3 : -3.63 (0.285) R2dE : 0.244 R2E : -0.0337
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.04 (0.818) R2dD*E : 0.0744 R2D*E : -0.0577
γ1 : -0.883 (0.107) R2dN8 : 0.073 R2N8 : -0.137
σ : 0.825
deviance : 314.01
__
_____
C
peak time of C : 4.65
E
wheather : temperature
threshold : 22.42
memory length : 2911
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
310.92 0.828 10.3 -5.94 1.72 -3.61 -1.17 4.96 -0.896 4.59 22.51 2983 -- --
344.02 0.864 10.1 -5.08 1.99 -4.07 -1.64 -- -0.622 4.3 21.41 3130 -- --
314.01 0.825 10.3 -5.93 1.69 -3.63 -- 5.04 -0.883 4.65 22.42 2911 -- --
329.75 0.846 10.1 -5.65 1.81 -5.63 -- -- -0.758 4.49 20.88 3013 -- --
460.76 1 10.3 -5.9 -- -3.88 -- 4.81 -0.862 -- 22.36 2734 -- --
626.98 1.17 9.92 -3.26 1.85 -- -1.85 -- 0.195 4.58 -- -- -- --
636.12 1.18 9.92 -3.25 1.84 -- -- -- 0.204 4.6 -- -- -- --
473.29 1.01 10.1 -5.44 -- -5.61 -- -- -0.658 -- 20.71 2754 -- --
854.3 1.36 9.89 -- 1.75 -2.08 -- -- 0.279 5.26 23.03 758 -- --
815.74 1.33 9.93 -3.18 -- -- -- -- 0.253 -- -- -- -- --
913.83 1.41 9.84 -- 1.78 -- -- -- 0.566 4.65 -- -- -- --
999.59 1.47 9.93 -- -- -2.45 -- -- 0.275 -- 23.1 1242 -- --
1081.72 1.54 9.85 -- -- -- -- -- 0.605 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.00 temperature 20.0 4320 > th dose independent rect. 18 5
2 314.40 temperature 20.0 4320 > th dose independent rect. 19 3
3 314.48 temperature 20.0 4320 < th dose independent rect. 18 5
5 315.85 temperature 20.0 4320 < th dose independent rect. 19 3
22 322.75 temperature 20.0 1440 < th dose independent rect. 22 16
30 324.21 temperature 20.0 1440 > th dose independent rect. 22 16
32 324.34 temperature 20.0 1440 < th dose independent rect. 16 15
37 324.84 temperature 20.0 1440 > th dose independent rect. 16 15
50 325.76 temperature 20.0 1440 < th dose independent sin 7 NA
61 326.21 temperature 20.0 1440 < th dose independent rect. 12 19
65 326.36 temperature 20.0 1440 > th dose independent rect. 12 19
75 326.63 temperature 20.0 1440 > th dose independent sin 6 NA
80 326.85 temperature 20.0 1440 < th dose independent sin 12 NA
82 326.88 wind 9.0 43200 > th dose independent rect. 22 21
102 327.30 temperature 20.0 1440 > th dose independent sin 12 NA
124 327.77 wind 9.0 43200 > th dose independent rect. 2 17
185 328.76 wind 9.0 43200 < th dose independent rect. 22 21
187 328.81 wind 7.0 43200 > th dose independent rect. 22 1
190 328.86 wind 9.0 43200 < th dose independent rect. 22 19
242 329.57 wind 7.0 43200 < th dose independent rect. 22 1
261 329.83 wind 9.0 43200 > th dose independent sin 1 NA
268 329.91 temperature 20.0 4320 > th dose independent sin 16 NA
272 329.93 wind 9.0 43200 > th dose independent rect. 18 23
279 330.00 temperature 20.0 4320 < th dose independent sin 16 NA
298 330.25 wind 7.0 43200 > th dose dependent rect. 21 20
304 330.44 wind 9.0 43200 < th dose independent rect. 2 15
330 330.75 humidity 70.0 43200 < th dose independent rect. 17 8
331 330.79 wind 9.0 43200 < th dose dependent rect. 23 1
344 330.94 wind 7.0 43200 > th dose dependent rect. 3 14
358 331.08 wind 9.0 43200 > th dose independent rect. 13 23
364 331.12 temperature 20.0 4320 < th dose dependent rect. 22 2
392 331.42 humidity 70.0 43200 > th dose independent rect. 17 8
402 331.57 wind 3.0 43200 < th dose dependent rect. 10 1
411 331.68 humidity 70.0 43200 > th dose independent rect. 18 6
412 331.68 humidity 90.0 14400 > th dose dependent rect. 5 2
415 331.71 wind 9.0 43200 > th dose independent rect. 2 23
417 331.72 wind 9.0 43200 > th dose independent rect. 13 21
422 331.76 wind 1.0 43200 > th dose dependent rect. 22 2
427 331.81 wind 9.0 43200 > th dose independent no NA NA
434 331.84 temperature 20.0 1440 > th dose independent rect. 1 10
446 331.94 wind 9.0 43200 > th dose independent rect. 6 23
488 332.26 wind 9.0 43200 < th dose independent rect. 18 23
496 332.36 wind 9.0 43200 < th dose independent rect. 13 23
501 332.42 wind 9.0 43200 < th dose independent sin 1 NA
528 332.62 wind 9.0 43200 > th dose independent rect. 11 23
549 332.82 wind 7.0 43200 > th dose dependent sin 1 NA
582 333.10 humidity 70.0 43200 < th dose independent rect. 19 1
591 333.14 wind 3.0 43200 < th dose dependent rect. 23 1
632 333.52 wind 9.0 43200 < th dose independent rect. 13 21
643 333.70 temperature 20.0 4320 < th dose independent rect. 5 21
662 333.88 temperature 20.0 4320 > th dose independent rect. 5 21
688 334.13 humidity 90.0 14400 < th dose independent rect. 23 1
690 334.15 humidity 70.0 43200 < th dose independent rect. 16 17
692 334.16 wind 9.0 43200 < th dose independent rect. 2 22
705 334.28 wind 9.0 43200 < th dose independent no NA NA
710 334.32 humidity 70.0 43200 < th dose dependent rect. 16 9
724 334.39 wind 9.0 43200 < th dose independent rect. 6 23
749 334.61 wind 3.0 43200 < th dose dependent rect. 21 4
773 334.81 wind 7.0 43200 > th dose dependent rect. 13 23
781 334.89 temperature 20.0 4320 < th dose independent rect. 3 21
793 334.96 humidity 60.0 43200 < th dose independent rect. 20 13
805 335.03 wind 7.0 43200 > th dose dependent rect. 18 23
828 335.27 precipitation 0.1 43200 < th dose independent rect. 6 2
831 335.27 precipitation 0.1 43200 < th dose dependent rect. 6 2
836 335.30 humidity 70.0 43200 > th dose independent rect. 19 2
863 335.46 humidity 60.0 43200 < th dose dependent rect. 19 14
867 335.50 temperature 20.0 1440 > th dose independent no NA NA
904 335.71 precipitation 0.1 43200 > th dose independent rect. 6 2
908 335.73 precipitation 0.1 43200 > th dose dependent rect. 6 2
909 335.74 wind 3.0 43200 < th dose independent rect. 10 2
928 335.84 humidity 70.0 43200 < th dose dependent rect. 17 5
932 335.87 temperature 20.0 1440 < th dose independent no NA NA
944 335.94 humidity 70.0 43200 > th dose independent rect. 16 17
962 336.05 temperature 20.0 4320 < th dose dependent rect. 21 9
970 336.07 wind 7.0 43200 > th dose dependent rect. 2 22