BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0355400 Os08g0355400|AK060790
(489 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50190.1 | chr3:18609164-18611169 REVERSE LENGTH=494 62 8e-10
AT3G50120.1 | chr3:18585157-18587246 REVERSE LENGTH=532 57 2e-08
AT3G50140.1 | chr3:18592472-18594562 REVERSE LENGTH=540 57 3e-08
AT3G50130.1 | chr3:18589111-18591222 REVERSE LENGTH=565 57 3e-08
AT3G47210.1 | chr3:17385545-17386969 FORWARD LENGTH=475 55 6e-08
AT3G50150.1 | chr3:18595809-18597551 REVERSE LENGTH=510 54 2e-07
AT3G50170.1 | chr3:18601857-18603738 REVERSE LENGTH=542 52 5e-07
>AT3G50190.1 | chr3:18609164-18611169 REVERSE LENGTH=494
Length = 493
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 321 ILDVKLIGRCGGIRLEFPSLYVDGETWCMLGNLIGLEQSNPDMIPQRVTAYCVLMSQLAC 380
+ D++ C LE P L + T +L NLI EQ + D Q +T+Y + + L
Sbjct: 330 LWDIQFKNGC----LEIPKLLIHDGTKSLLSNLIAFEQCHIDSTKQ-ITSYIIFVENLIN 384
Query: 381 TKEDVELLARRRVTDHLMRNDEDCATKFAALCDGVNFNLDDPSRNYLQKECVALDQRYRS 440
+ EDV L + +H + +D + F LC V F DP +YL C+ +D+ Y
Sbjct: 385 SNEDVRYLQYCGIIEHWLESDSEVVDLFHKLCQDVVF---DPIDSYLYPLCLGVDRFYSR 441
Query: 441 RPSQWTAWMLREHCRN 456
+ S ++A +L ++ N
Sbjct: 442 KWSLFSAVILHKYQLN 457
>AT3G50120.1 | chr3:18585157-18587246 REVERSE LENGTH=532
Length = 531
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 335 LEFPSLYVDGETWCMLGNLIGLEQSNPDMIPQRVTAYCVLMSQLACTKEDVELLARRRVT 394
LE P L + T + NLI EQ + D +T+Y + M L + EDV L +
Sbjct: 381 LEIPRLLIHDGTKSLFLNLIAFEQCHIDS-SNDITSYIIFMDNLIDSHEDVSYLHYCGII 439
Query: 395 DHLMRNDEDCATKFAALCDGVNFNLDDPSRNYLQKECVALDQRYRSRPSQWTAWMLREHC 454
+H + +D + A F LC V F+ +D +YL + + +++ Y + + W A + ++
Sbjct: 440 EHWLGSDSEVADLFNRLCQEVVFDTED---SYLSRLSIEVNRYYDHKWNAWRATLKHKYF 496
Query: 455 RNP 457
NP
Sbjct: 497 NNP 499
>AT3G50140.1 | chr3:18592472-18594562 REVERSE LENGTH=540
Length = 539
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 323 DVKLIGRCGGIRLEFPSLYVDGETWCMLGNLIGLEQSNPDMIPQRVTAYCVLMSQLACTK 382
D++ C LE P L + T + NLI EQ + D +T+Y + M L +
Sbjct: 381 DIQFKNGC----LEIPKLLIHDGTKSLFSNLIAYEQCHIDST-NDITSYIIFMDNLIDSA 435
Query: 383 EDVELLARRRVTDHLMRNDEDCATKFAALCDGVNFNLDDPSRNYLQKECVALDQRYRSRP 442
ED+ L + +H + ND + A F LC V F+L++ YL + +D+ Y +
Sbjct: 436 EDIRYLHYYDIIEHWLGNDSEVADVFNRLCQEVAFDLEN---TYLSELSNKVDRYYNRKW 492
Query: 443 SQWTAWMLREHCRNPCXXXXXXXXXXXXXFGVLQAVYT 480
+ A + ++ NP + Q+ +T
Sbjct: 493 NVLKATLKHKYFSNPWAYFSFFAAVILLLLTLFQSFFT 530
>AT3G50130.1 | chr3:18589111-18591222 REVERSE LENGTH=565
Length = 564
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 335 LEFPSLYVDGETWCMLGNLIGLEQSNPDMIPQRVTAYCVLMSQLACTKEDVELLARRRVT 394
LE P L + T + NLI EQ + D +T+Y + M L + EDV L +
Sbjct: 414 LEIPKLLIHDGTKSLFSNLIAFEQCHIDS-SNDITSYIIFMDNLIDSSEDVRYLHYCGII 472
Query: 395 DHLMRNDEDCATKFAALCDGVNFNLDDPSRNYLQKECVALDQRYRSRPSQWTAWMLREHC 454
+H + ND + A F LC V F DP +YL + +D+ Y + + A + ++
Sbjct: 473 EHWLGNDYEVADLFNRLCQEVAF---DPQNSYLSQLSNKVDRNYSRKWNVLKAILKHKYF 529
Query: 455 RNP 457
NP
Sbjct: 530 NNP 532
>AT3G47210.1 | chr3:17385545-17386969 FORWARD LENGTH=475
Length = 474
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 295 ARVDLTGVDLISIAEGPGGEACGALSILDVKLIGRCGGIRLEFPSLYVDGETWCMLGNLI 354
R+ L G+D GA S+LD++L RL+ P L +DG +L N +
Sbjct: 319 TRLSLQGIDF--------SLRSGADSMLDIRLKKN----RLQIPVLRLDGFIISILLNCV 366
Query: 355 GLEQSNPDMIPQRVTAYCVLMSQLACTKEDVELLARRRVTDHLMRNDEDCATKFAALCDG 414
EQ +T+Y V M L KED L+RRR+ ++ ++++ + F +C
Sbjct: 367 AFEQFYAKS-TNHITSYVVFMGCLLNGKEDATFLSRRRIIENYFGSEKEVSKFFKTICKD 425
Query: 415 VNFNLDDPSRNYLQKECVALDQRYRSRPSQWTA 447
V F D +YL+ V +++ S+W +
Sbjct: 426 VVF---DIHASYLRNVFVEINE----NTSKWYS 451
>AT3G50150.1 | chr3:18595809-18597551 REVERSE LENGTH=510
Length = 509
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 4/147 (2%)
Query: 335 LEFPSLYVDGETWCMLGNLIGLEQSNPDMIPQRVTAYCVLMSQLACTKEDVELLARRRVT 394
L+ P L + T + NLI EQ + +T+Y + M L + +DV L +
Sbjct: 359 LKIPKLLIHDGTKSLFSNLIAFEQCHTQS-SNNITSYIIFMDNLINSSQDVSYLHHDGII 417
Query: 395 DHLMRNDEDCATKFAALCDGVNFNLDDPSRNYLQKECVALDQRYRSRPSQWTAWMLREHC 454
+H + +D + A F LC V F DP YL + +++ Y + + A + +++
Sbjct: 418 EHWLGSDSEVADLFNRLCKEVIF---DPKDGYLSQLSREVNRYYSRKWNSLKATLRQKYF 474
Query: 455 RNPCXXXXXXXXXXXXXFGVLQAVYTV 481
NP Q+ + V
Sbjct: 475 NNPWAYFSFSAAVILLFLTFFQSFFAV 501
>AT3G50170.1 | chr3:18601857-18603738 REVERSE LENGTH=542
Length = 541
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 335 LEFPSLYVDGETWCMLGNLIGLEQSNPDMIPQRVTAYCVLMSQLACTKEDVELLARRRVT 394
LE P L + T + NLI EQ + + +T+Y + M L + EDV L +
Sbjct: 389 LEIPKLLIHDGTKSLFSNLIAFEQCHIES-SNHITSYIIFMDNLINSSEDVSYLHYCGII 447
Query: 395 DHLMRNDEDCATKFAALCDGVNFNLDDPSRNYLQKECVALDQRYRSRPSQWTAWMLREHC 454
+H + +D + A F LC V F DP ++L + +++ Y + + A + ++
Sbjct: 448 EHWLGSDSEVADLFNRLCQEVVF---DPKDSHLSRLSGDVNRYYNRKWNVLKATLTHKYF 504
Query: 455 RNPCXXXXXXXXXXXXXFGVLQAVYTV 481
NP + Q+ Y V
Sbjct: 505 NNPWAYFSFSAAVILLLLTLCQSFYAV 531
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,781,365
Number of extensions: 390592
Number of successful extensions: 892
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 7
Length of query: 489
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,282,721
Effective search space: 3197130306
Effective search space used: 3197130306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)