FiT-DB / Search/ Help/ Sample detail
|
Os08g0342400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)].
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.01 | 0.373 | 10.9 | 0.2 | 2.29 | 0.973 | 0.782 | 0.133 | -0.147 | 20.2 | 27 | 257 | -- | -- |
| 63.04 | 0.37 | 10.9 | 0.175 | 2.29 | 0.978 | 0.799 | -- | -0.155 | 20.2 | 27.03 | 255 | -- | -- |
| 64.17 | 0.373 | 10.9 | 0.233 | 2.27 | 1 | -- | 0.482 | -0.12 | 20.2 | 27.4 | 260 | -- | -- |
| 64.44 | 0.374 | 10.9 | 0.16 | 2.29 | 1.04 | -- | -- | -0.142 | 20.2 | 27.4 | 255 | -- | -- |
| 224.16 | 0.697 | 10.9 | -0.256 | -- | 2.25 | -- | 0.278 | -0.597 | -- | 26.39 | 517 | -- | -- |
| 99.98 | 0.469 | 10.9 | 0.441 | 2.77 | -- | 1.23 | -- | 0.0294 | 19.3 | -- | -- | -- | -- |
| 104.09 | 0.478 | 10.9 | 0.413 | 2.77 | -- | -- | -- | 0.0316 | 19.3 | -- | -- | -- | -- |
| 223.32 | 0.696 | 10.9 | -0.298 | -- | 2.31 | -- | -- | -0.604 | -- | 26.4 | 519 | -- | -- |
| 65.01 | 0.376 | 10.9 | -- | 2.27 | 1.06 | -- | -- | -0.173 | 20.2 | 27.41 | 255 | -- | -- |
| 511.14 | 1.06 | 10.8 | 0.367 | -- | -- | -- | -- | -0.0142 | -- | -- | -- | -- | -- |
| 108.59 | 0.487 | 10.9 | -- | 2.76 | -- | -- | -- | -0.0144 | 19.4 | -- | -- | -- | -- |
| 225.46 | 0.699 | 10.9 | -- | -- | 2.27 | -- | -- | -0.56 | -- | 26.34 | 517 | -- | -- |
| 514.69 | 1.06 | 10.8 | -- | -- | -- | -- | -- | -0.0549 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.04 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 10 |
| 3 | 54.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 7 | 54.93 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 11 | 55.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 23 | 56.37 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 40 | 57.44 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 6 |
| 42 | 57.68 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 53 | 58.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 83 | 58.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 97 | 59.08 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |
| 106 | 59.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 132 | 59.60 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 16 |
| 169 | 60.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 258 | 60.92 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 6 |
| 357 | 61.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 548 | 63.42 | temperature | 25 | 10 | > th | dose independent | rect. | 10 | 10 |
| 598 | 63.91 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 20 |
| 763 | 64.57 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 766 | 64.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 15 |
