FiT-DB / Search/ Help/ Sample detail

Os08g0338700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chaperone GrpE type 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0198) R2 : 0.87
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.13 (0.0542) R2dC : 0.541 R2C : 0.757
β3 : -0.991 (0.0548) R2dE : 0.114 R2E : 0.33
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00382 (0.0418) R2dN8 : 7.42e-06 R2N8 : 0.000149
σ : 0.371
deviance : 63.57
__
_____
C
peak time of C : 14.6
E
wheather : radiation
threshold : 48.79
memory length : 78
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.38
open length of G : 5.65

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.26 0.365 10.6 0.306 2.12 -0.993 -0.502 -0.425 0.0161 14.6 49.86 91 3.17 5.88
60.59 0.363 10.6 0.326 2.12 -1.01 -0.406 -- 0.0308 14.6 43.72 90 3.25 5.87
60.88 0.363 10.6 0.317 2.13 -0.991 -- -0.173 0.0273 14.6 46.01 89 3.25 5.77
60.92 0.364 10.6 0.312 2.13 -0.996 -- -- 0.0231 14.6 48.65 83 3.32 5.68
212.85 0.679 10.6 0.426 -- -1.78 -- -0.241 0.113 -- 104.2 35 0.65 8.18
84.94 0.432 10.6 0.281 2.69 -- -0.0988 -- -0.0306 15.5 -- -- -- --
84.97 0.432 10.6 0.279 2.69 -- -- -- -0.0311 15.5 -- -- -- --
211.38 0.677 10.6 0.284 -- -1.79 -- -- 0.125 -- 61.86 72 0.267 8.57
63.57 0.371 10.6 -- 2.13 -0.991 -- -- -0.00382 14.6 48.79 78 3.38 5.65
488.81 1.03 10.6 0.166 -- -- -- -- -0.102 -- -- -- -- --
87.03 0.436 10.6 -- 2.68 -- -- -- -0.0622 15.5 -- -- -- --
213.56 0.681 10.6 -- -- -1.8 -- -- 0.0898 -- 58.68 78 0.133 8.65
489.54 1.03 10.6 -- -- -- -- -- -0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.66 wind 5.0 270 < th dose independent rect. 3 2
2 60.77 temperature 15.0 270 > th dose independent rect. 15 15
3 60.80 radiation 20.0 90 < th dose independent rect. 3 6
5 60.98 humidity 80.0 270 > th dose independent rect. 3 2
6 61.00 radiation 40.0 90 < th dose dependent rect. 3 6
7 61.15 wind 5.0 270 < th dose independent rect. 2 4
9 61.34 precipitation 0.1 270 < th dose independent rect. 3 2
10 61.34 precipitation 0.1 270 < th dose dependent rect. 3 2
12 61.51 temperature 10.0 270 > th dose independent rect. 3 2
14 61.51 temperature 30.0 270 < th dose independent rect. 3 2
15 61.51 humidity 50.0 270 > th dose independent rect. 3 2
18 61.51 atmosphere 995.0 270 > th dose independent rect. 3 2
19 61.51 atmosphere 1010.0 270 < th dose independent rect. 3 2
21 61.51 radiation 20.0 270 < th dose independent rect. 3 2
24 61.51 temperature 10.0 270 > th dose independent rect. 5 22
25 61.53 radiation 30.0 270 < th dose dependent rect. 3 2
28 61.56 radiation 1.0 270 < th dose independent rect. 3 2
31 61.57 wind 9.0 270 < th dose dependent rect. 3 2
35 61.68 wind 9.0 90 < th dose dependent rect. 3 6
36 61.71 humidity 50.0 90 > th dose dependent rect. 3 6
38 61.88 humidity 50.0 270 > th dose dependent rect. 3 2
40 61.90 humidity 70.0 90 > th dose independent rect. 3 6
41 61.91 wind 9.0 270 < th dose dependent rect. 2 4
42 61.96 humidity 80.0 270 > th dose independent rect. 2 4
43 61.97 temperature 10.0 270 > th dose dependent rect. 3 2
46 62.03 radiation 40.0 90 < th dose dependent rect. 3 8
47 62.07 wind 9.0 270 < th dose independent rect. 5 22
48 62.08 precipitation 0.1 270 < th dose independent rect. 2 4
49 62.08 precipitation 0.1 270 < th dose dependent rect. 2 4
51 62.10 temperature 30.0 90 < th dose independent rect. 3 6
52 62.11 precipitation 0.1 270 < th dose independent rect. 6 9
53 62.11 radiation 30.0 270 < th dose dependent rect. 1 8
54 62.11 precipitation 0.1 270 < th dose dependent rect. 6 9
57 62.22 temperature 10.0 270 > th dose dependent rect. 2 4
61 62.27 atmosphere 1000.0 10 > th dose independent rect. 22 6
62 62.27 temperature 10.0 270 > th dose independent rect. 6 9
63 62.27 atmosphere 1015.0 270 < th dose independent rect. 6 9
65 62.29 atmosphere 1010.0 270 < th dose independent rect. 2 4
66 62.29 atmosphere 995.0 270 > th dose independent rect. 6 9
67 62.31 radiation 10.0 270 < th dose independent rect. 2 4
69 62.32 temperature 10.0 270 > th dose independent rect. 2 4
71 62.32 temperature 30.0 270 < th dose independent rect. 2 4
72 62.32 humidity 50.0 270 > th dose independent rect. 2 4
75 62.32 atmosphere 995.0 270 > th dose independent rect. 2 4
80 62.32 temperature 10.0 270 > th dose independent rect. 6 20
81 62.32 radiation 30.0 270 < th dose dependent rect. 2 4
83 62.33 atmosphere 1000.0 270 > th dose independent rect. 21 4
86 62.40 precipitation 0.1 90 < th dose independent rect. 3 6
87 62.40 precipitation 0.1 90 < th dose dependent rect. 3 6
91 62.44 humidity 50.0 270 > th dose independent rect. 6 9
93 62.47 wind 9.0 270 < th dose independent rect. 15 15
97 62.52 radiation 40.0 270 < th dose independent rect. 15 15
98 62.52 humidity 60.0 90 > th dose dependent rect. 3 8
99 62.53 precipitation 0.1 270 < th dose independent rect. 15 15
100 62.53 precipitation 0.1 270 < th dose dependent rect. 15 15
102 62.55 wind 9.0 270 < th dose independent rect. 6 20
105 62.58 temperature 10.0 90 > th dose independent rect. 3 6
108 62.58 atmosphere 995.0 90 > th dose independent rect. 3 6
109 62.58 atmosphere 1015.0 90 < th dose independent rect. 3 6
110 62.58 temperature 10.0 90 > th dose independent rect. 9 18
114 62.63 humidity 50.0 270 > th dose dependent rect. 2 4
127 62.71 radiation 20.0 270 < th dose independent rect. 1 8
128 62.78 wind 9.0 270 < th dose independent rect. 6 9
133 62.83 atmosphere 1000.0 270 > th dose independent rect. 20 6
135 62.83 radiation 1.0 270 < th dose independent rect. 2 6
143 62.92 precipitation 0.1 270 < th dose independent rect. 6 20
144 62.92 precipitation 0.1 270 < th dose dependent rect. 6 20
145 62.93 wind 5.0 270 < th dose independent rect. 1 6
150 62.97 temperature 15.0 270 > th dose independent rect. 11 10
153 62.99 precipitation 0.1 90 < th dose independent rect. 8 19
154 62.99 precipitation 0.1 90 < th dose dependent rect. 8 19
156 63.00 wind 5.0 10 < th dose independent rect. 4 5
158 63.01 temperature 15.0 270 > th dose independent rect. 1 20
159 63.01 wind 9.0 10 < th dose dependent rect. 4 5
165 63.04 wind 9.0 90 < th dose independent rect. 9 18
181 63.17 radiation 30.0 90 < th dose independent rect. 3 8
192 63.23 precipitation 0.1 270 < th dose independent rect. 5 22
193 63.23 precipitation 0.1 270 < th dose dependent rect. 5 22
195 63.25 radiation 1.0 270 < th dose independent rect. 2 17
209 63.28 humidity 80.0 270 > th dose independent rect. 1 7
212 63.30 radiation 1.0 270 < th dose dependent rect. 2 17
218 63.35 precipitation 0.1 10 < th dose independent rect. 4 5
219 63.35 precipitation 0.1 10 < th dose dependent rect. 4 5
229 63.41 temperature 10.0 10 > th dose independent rect. 4 5
231 63.41 temperature 30.0 10 < th dose independent rect. 4 5
232 63.41 humidity 50.0 10 > th dose independent rect. 4 5
234 63.41 atmosphere 995.0 10 > th dose independent rect. 4 5
235 63.41 atmosphere 1015.0 10 < th dose independent rect. 4 5
236 63.41 temperature 10.0 10 > th dose independent rect. 9 19
238 63.44 radiation 40.0 10 < th dose independent rect. 4 5
241 63.45 radiation 1.0 270 < th dose independent rect. 2 15
268 63.69 radiation 40.0 270 < th dose dependent rect. 15 15
276 63.73 wind 9.0 270 < th dose dependent rect. 1 6
282 63.77 humidity 50.0 270 > th dose dependent rect. 21 4
283 63.78 atmosphere 995.0 270 > th dose dependent rect. 21 4
286 63.78 radiation 1.0 270 < th dose dependent rect. 3 14
288 63.79 humidity 80.0 90 > th dose independent rect. 3 8
291 63.81 radiation 40.0 10 < th dose dependent rect. 4 5
296 63.82 wind 9.0 10 < th dose independent rect. 9 19
304 63.87 precipitation 0.1 10 < th dose independent rect. 9 19
307 63.87 precipitation 0.1 10 < th dose dependent rect. 9 19
310 63.88 temperature 10.0 270 > th dose dependent rect. 1 6
311 63.89 precipitation 0.1 270 < th dose independent rect. 1 6
312 63.89 precipitation 0.1 270 < th dose dependent rect. 1 6
349 64.01 temperature 15.0 270 > th dose independent rect. 2 18
354 64.04 atmosphere 995.0 90 > th dose independent rect. 8 19
355 64.04 humidity 50.0 90 > th dose dependent rect. 21 6
363 64.07 temperature 10.0 270 > th dose independent rect. 1 6
367 64.07 temperature 30.0 270 < th dose independent rect. 1 6
369 64.07 humidity 50.0 270 > th dose independent rect. 1 6
373 64.07 atmosphere 995.0 270 > th dose independent rect. 1 6
375 64.07 atmosphere 1015.0 270 < th dose independent rect. 1 6
387 64.10 atmosphere 1015.0 270 < th dose dependent rect. 3 2
391 64.12 atmosphere 995.0 270 > th dose independent rect. 6 20
408 64.13 atmosphere 995.0 10 > th dose dependent rect. 22 6
428 64.17 humidity 50.0 10 > th dose dependent rect. 4 5
433 64.18 temperature 10.0 10 > th dose dependent rect. 3 6
452 64.28 humidity 50.0 270 > th dose dependent rect. 1 8
482 64.43 wind 1.0 270 > th dose independent rect. 3 2
504 64.50 atmosphere 995.0 10 > th dose independent rect. 9 19
522 64.53 atmosphere 995.0 270 > th dose dependent rect. 20 6
526 64.54 precipitation 0.1 270 < th dose independent rect. 1 20
528 64.54 precipitation 0.1 270 < th dose dependent rect. 1 20
530 64.55 precipitation 0.1 270 < th dose independent rect. 2 17
533 64.55 precipitation 0.1 270 < th dose dependent rect. 2 17
546 64.61 wind 9.0 270 < th dose independent rect. 21 4
547 64.61 temperature 10.0 270 > th dose independent rect. 21 4
548 64.61 temperature 30.0 270 < th dose independent rect. 21 4
549 64.61 humidity 50.0 270 > th dose independent rect. 21 4
553 64.61 radiation 1.0 270 < th dose independent rect. 21 4
558 64.61 atmosphere 995.0 270 > th dose independent rect. 15 15
560 64.61 radiation 1.0 270 < th dose dependent rect. 21 4
592 64.73 precipitation 0.1 270 < th dose independent rect. 21 4
593 64.73 humidity 60.0 270 > th dose independent rect. 19 7
597 64.73 precipitation 0.1 270 < th dose dependent rect. 21 4
598 64.74 wind 9.0 270 < th dose independent rect. 19 7
599 64.74 temperature 10.0 270 > th dose independent rect. 19 7
600 64.74 temperature 30.0 270 < th dose independent rect. 19 7
603 64.74 radiation 1.0 270 < th dose independent rect. 19 7
609 64.74 atmosphere 1015.0 270 < th dose independent rect. 2 17
610 64.74 atmosphere 1015.0 270 < th dose independent rect. 1 20
611 64.74 radiation 1.0 270 < th dose dependent rect. 19 7
637 64.80 temperature 10.0 1440 > th dose independent rect. 4 6
640 64.80 atmosphere 995.0 1440 > th dose independent rect. 4 6
641 64.80 atmosphere 1015.0 1440 < th dose independent rect. 4 6
643 64.80 temperature 10.0 1440 > th dose independent rect. 10 18
665 64.81 wind 9.0 270 < th dose independent rect. 1 20
682 64.84 precipitation 0.1 10 < th dose independent rect. 4 18
684 64.84 precipitation 0.1 10 < th dose dependent rect. 4 18
689 64.85 wind 9.0 270 < th dose independent rect. 2 17
697 64.87 humidity 50.0 10 > th dose dependent rect. 22 6
702 64.90 wind 9.0 90 < th dose dependent rect. 21 6
705 64.92 wind 9.0 10 < th dose independent rect. 22 6
706 64.92 temperature 10.0 10 > th dose independent rect. 22 6
707 64.92 temperature 30.0 10 < th dose independent rect. 22 6
708 64.92 humidity 50.0 10 > th dose independent rect. 22 6
712 64.92 radiation 1.0 10 < th dose independent rect. 22 6
718 64.92 temperature 10.0 10 > th dose independent rect. 4 18
720 64.92 atmosphere 1015.0 10 < th dose independent rect. 4 18
722 64.92 radiation 1.0 10 < th dose dependent rect. 22 6
728 64.93 wind 9.0 10 < th dose independent rect. 4 18
731 64.95 precipitation 0.1 270 < th dose independent rect. 20 6
732 64.95 precipitation 0.1 270 < th dose dependent rect. 20 6
736 64.97 radiation 1.0 270 > th dose independent rect. 6 9
747 65.01 atmosphere 1010.0 270 < th dose independent rect. 12 9
782 65.08 humidity 50.0 270 > th dose independent rect. 21 14
793 65.12 temperature 10.0 270 > th dose independent rect. 21 14
794 65.12 atmosphere 995.0 270 > th dose independent rect. 21 14
799 65.14 atmosphere 1000.0 10 > th dose independent rect. 20 8
836 65.26 wind 9.0 270 < th dose independent rect. 21 14
849 65.33 precipitation 0.1 10 < th dose independent rect. 22 6
850 65.33 precipitation 0.1 10 < th dose dependent rect. 22 6
924 65.53 wind 9.0 270 < th dose independent rect. 11 10
954 65.58 humidity 60.0 90 > th dose dependent rect. 3 12
988 65.66 wind 9.0 10 < th dose dependent rect. 22 6
997 65.70 radiation 1.0 270 < th dose dependent sin 2 NA