BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0338700 Os08g0338700|AK059052
         (311 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26780.1  | chr4:13485066-13486560 REVERSE LENGTH=328          223   1e-58
AT5G55200.1  | chr5:22394705-22396335 FORWARD LENGTH=303          195   2e-50
AT5G17710.2  | chr5:5839560-5841639 REVERSE LENGTH=327             52   3e-07

>AT4G26780.1 | chr4:13485066-13486560 REVERSE LENGTH=328
          Length = 327

 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/139 (74%), Positives = 122/139 (87%)

Query: 151 LRSYAEMENVIARTKRESDNAKKYAVQGFSKSLLDVADNLSRASSVVKESFSKIDTSNES 210
           LR+YAEMENV+ RT+R+++N KKYAVQ F+KSLLDVADNL RASSVVKESFSK+DTS +S
Sbjct: 170 LRTYAEMENVMDRTRRDAENTKKYAVQNFAKSLLDVADNLGRASSVVKESFSKLDTSEDS 229

Query: 211 AEAVKLLNTLLEGVEMTEKQLGEVFKKFGVEKFDPLNEKFDPNKHAALFQIPDPSKPSGT 270
           A A  LL TLLEGVEMTEKQL EVFKKFG+EK+DP+NE FDPN+H A+FQ+PD SKP GT
Sbjct: 230 AGAAPLLKTLLEGVEMTEKQLAEVFKKFGMEKYDPINEPFDPNRHNAVFQVPDASKPEGT 289

Query: 271 VAAVVKVGYMLHDRVLRPA 289
           VA V+K GY L+DRV+RPA
Sbjct: 290 VAHVLKSGYTLYDRVIRPA 308



>AT5G55200.1 | chr5:22394705-22396335 FORWARD LENGTH=303
          Length = 302

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 141/228 (61%), Gaps = 9/228 (3%)

Query: 62  STFQRFGFSSSAPQQDDKAANKQTEDGVNKSTQSEASNETNSSPGTENASQADTEDLDLS 121
           +  QRFGF SS+  +           G   +T+   + ET+ +     A+ A+ +  DLS
Sbjct: 65  NVLQRFGFFSSSSAE---------PKGNESNTEVPKTGETSENVEVGKATDAEIDFDDLS 115

Query: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSYAEMENVIARTKRESDNAKKYAVQGFSK 181
                                        LR+YAE +N++ RT R +++AKK+AVQ F+ 
Sbjct: 116 RDDLVKLVSEKEDLLKVQQKDIMEMKDKFLRTYAEQQNLMDRTNRNAESAKKFAVQNFAT 175

Query: 182 SLLDVADNLSRASSVVKESFSKIDTSNESAEAVKLLNTLLEGVEMTEKQLGEVFKKFGVE 241
           SLLDVADNL RASSVVKESFSKIDTS + A A  LL  LLEGVEMTEKQL EVF+K G+ 
Sbjct: 176 SLLDVADNLERASSVVKESFSKIDTSKDLAGATPLLKNLLEGVEMTEKQLAEVFRKAGLV 235

Query: 242 KFDPLNEKFDPNKHAALFQIPDPSKPSGTVAAVVKVGYMLHDRVLRPA 289
           K DPLNE F+PN+H A+FQ+PD SKP GT+A V+K GY L+DRV+RPA
Sbjct: 236 KEDPLNEPFNPNRHNAVFQVPDASKPKGTIAHVLKSGYSLYDRVIRPA 283



>AT5G17710.2 | chr5:5839560-5841639 REVERSE LENGTH=327
          Length = 326

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 151 LRSYAEMENVIARTKRESDNAKKYAVQGFSKSLLDVADNLSRASSVVKESFSKIDTSNES 210
           +R  A+ +N   RT+RE  N    A     ++LL V DN  RA S +K     ++T  E 
Sbjct: 167 IRISADFDNFRKRTERERLNLVSNAQGEVVENLLAVLDNFERAKSQIK-----VETEGEE 221

Query: 211 AEAVKLLNTLLEGVEMTEKQLGEVFKKFGVEKFDPLNEKFDPNKHAALFQIPDPSKPSGT 270
               K+ N+     +   KQ  E+    GV   + + ++FDP  H A+ +        G 
Sbjct: 222 ----KVTNSY----QSIYKQFVEILGSLGVIHVETVGKQFDPMLHEAIMREDSAEYEEGI 273

Query: 271 VAAVVKVGYMLHDRVLRPA 289
           V    + G++L +R+LRP+
Sbjct: 274 VLEEYRKGFLLGERLLRPS 292



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.123    0.328 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,483,320
Number of extensions: 155543
Number of successful extensions: 657
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 4
Length of query: 311
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 213
Effective length of database: 8,419,801
Effective search space: 1793417613
Effective search space used: 1793417613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 111 (47.4 bits)