Os08g0335000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pre-mRNA splicing factor RNA helicase PRP2.
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Os08g0335000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pre-mRNA splicing factor RNA helicase PRP2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.69 | 0.208 | 9.52 | 0.7 | 0.137 | -0.86 | 0.469 | 1.91 | 0.309 | 11.7 | 20.55 | 609 | -- | -- |
| 21.74 | 0.217 | 9.56 | 0.368 | 0.328 | -0.8 | 0.13 | -- | 0.206 | 8.87 | 14.88 | 1713 | -- | -- |
| 20.52 | 0.211 | 9.53 | 0.678 | 0.159 | -0.851 | -- | 1.83 | 0.299 | 11.9 | 20.76 | 557 | -- | -- |
| 21.25 | 0.215 | 9.56 | 0.487 | 0.34 | -0.772 | -- | -- | 0.216 | 8.55 | 13.31 | 4837 | -- | -- |
| 21.33 | 0.215 | 9.53 | 0.687 | -- | -0.893 | -- | 1.6 | 0.306 | -- | 21.04 | 712 | -- | -- |
| 32.29 | 0.266 | 9.59 | 0.118 | 0.361 | -- | 0.167 | -- | 0.0629 | 8.81 | -- | -- | -- | -- |
| 32.38 | 0.266 | 9.59 | 0.123 | 0.362 | -- | -- | -- | 0.0626 | 8.68 | -- | -- | -- | -- |
| 22.97 | 0.223 | 9.57 | 0.371 | -- | -0.881 | -- | -- | 0.222 | -- | 18 | 735 | -- | -- |
| 24.49 | 0.23 | 9.58 | -- | 0.346 | -0.479 | -- | -- | 0.126 | 7.87 | 21.88 | 2542 | -- | -- |
| 39.77 | 0.295 | 9.6 | 0.124 | -- | -- | -- | -- | 0.0657 | -- | -- | -- | -- | -- |
| 32.77 | 0.268 | 9.6 | -- | 0.362 | -- | -- | -- | 0.049 | 8.65 | -- | -- | -- | -- |
| 25.85 | 0.237 | 9.58 | -- | -- | -0.704 | -- | -- | 0.155 | -- | 21.45 | 736 | -- | -- |
| 40.17 | 0.296 | 9.61 | -- | -- | -- | -- | -- | 0.052 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 13 | 19.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 18 | 19.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 23 | 19.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 24 | 19.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 29 | 19.94 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 38 | 19.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 44 | 19.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 57 | 20.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 72 | 20.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 79 | 20.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 92 | 20.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 103 | 20.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 403 | 20.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 496 | 20.37 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 526 | 20.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 528 | 20.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 544 | 20.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 561 | 20.41 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 612 | 20.45 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 620 | 20.46 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 631 | 20.47 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 633 | 20.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 663 | 20.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 669 | 20.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 701 | 20.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 749 | 20.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 771 | 20.59 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 772 | 20.59 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 870 | 20.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 903 | 20.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 915 | 20.66 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 978 | 20.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |