BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0335000 Os08g0335000|J013158K19
(47 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32490.1 | chr1:11742356-11749286 REVERSE LENGTH=1045 62 4e-11
AT2G35340.1 | chr2:14872728-14879615 FORWARD LENGTH=1045 62 8e-11
AT4G16680.1 | chr4:9388613-9390774 REVERSE LENGTH=657 60 2e-10
AT3G26560.1 | chr3:9750122-9753719 REVERSE LENGTH=1169 55 5e-09
AT5G13010.1 | chr5:4122747-4128660 FORWARD LENGTH=1256 53 3e-08
AT4G18465.1 | chr4:10197056-10201611 FORWARD LENGTH=696 51 1e-07
AT1G26370.1 | chr1:9122030-9125368 REVERSE LENGTH=718 50 3e-07
AT1G27900.1 | chr1:9715615-9720346 REVERSE LENGTH=701 46 4e-06
>AT1G32490.1 | chr1:11742356-11749286 REVERSE LENGTH=1045
Length = 1044
Score = 62.4 bits (150), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/31 (87%), Positives = 30/31 (96%)
Query: 1 VIVIVGETGSGKTTQIPQYLHEAGYTAKGKV 31
V+VIVG+TGSGKTTQIPQYLHEAGYT +GKV
Sbjct: 422 VLVIVGDTGSGKTTQIPQYLHEAGYTKRGKV 452
>AT2G35340.1 | chr2:14872728-14879615 FORWARD LENGTH=1045
Length = 1044
Score = 61.6 bits (148), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/31 (87%), Positives = 29/31 (93%)
Query: 1 VIVIVGETGSGKTTQIPQYLHEAGYTAKGKV 31
V++IVGETGSGKTTQIPQYLHEAGYT GKV
Sbjct: 422 VLIIVGETGSGKTTQIPQYLHEAGYTKLGKV 452
>AT4G16680.1 | chr4:9388613-9390774 REVERSE LENGTH=657
Length = 656
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 1 VIVIVGETGSGKTTQIPQYLHEAGYTAKGKV 31
V+VIVGETGSGKTTQIPQYL EAGYT +GK+
Sbjct: 233 VLVIVGETGSGKTTQIPQYLQEAGYTKRGKI 263
>AT3G26560.1 | chr3:9750122-9753719 REVERSE LENGTH=1169
Length = 1168
Score = 55.5 bits (132), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 1 VIVIVGETGSGKTTQIPQYLHEAGYTAKGKV 31
V+V++GETGSGKTTQ+ QYL EAGYT KGK+
Sbjct: 533 VLVVIGETGSGKTTQVTQYLAEAGYTTKGKI 563
>AT5G13010.1 | chr5:4122747-4128660 FORWARD LENGTH=1256
Length = 1255
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 VIVIVGETGSGKTTQIPQYLHEAGYTAKGKV 31
VIV+VGETGSGKTTQ+ QYLHE GYT G V
Sbjct: 576 VIVVVGETGSGKTTQLTQYLHEDGYTINGIV 606
>AT4G18465.1 | chr4:10197056-10201611 FORWARD LENGTH=696
Length = 695
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/29 (75%), Positives = 25/29 (86%)
Query: 3 VIVGETGSGKTTQIPQYLHEAGYTAKGKV 31
+IVGETGSGKTTQIPQYL EAG+ G+V
Sbjct: 68 IIVGETGSGKTTQIPQYLKEAGWAEGGRV 96
>AT1G26370.1 | chr1:9122030-9125368 REVERSE LENGTH=718
Length = 717
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 28/31 (90%)
Query: 1 VIVIVGETGSGKTTQIPQYLHEAGYTAKGKV 31
+++IVGETGSGKTTQ+PQ+L+ AG+ +GK+
Sbjct: 59 ILIIVGETGSGKTTQLPQFLYNAGFCREGKM 89
>AT1G27900.1 | chr1:9715615-9720346 REVERSE LENGTH=701
Length = 700
Score = 45.8 bits (107), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 1 VIVIVGETGSGKTTQIPQYLHEAGYTAKGKV 31
V+VI+GETGSGK+TQ+ Q LH GYT G +
Sbjct: 22 VVVIIGETGSGKSTQLSQILHRHGYTKSGVI 52
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.141 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,079,981
Number of extensions: 28883
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 8
Length of query: 47
Length of database: 11,106,569
Length adjustment: 21
Effective length of query: 26
Effective length of database: 10,530,833
Effective search space: 273801658
Effective search space used: 273801658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)