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Os08g0326300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant MuDR transposase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0148) R2 : 0.000275
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.011 (0.0311) R2dN8 : 0.000356 R2N8 : 0.000275
σ : 0.278
deviance : 35.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.18 0.195 10.5 0.75 0.454 0.67 -0.0525 -1.31 0.251 11.7 29.13 30 -- --
19.18 0.206 10.5 0.513 0.476 0.688 0.32 -- 0.188 11.8 29.13 30 -- --
17.19 0.193 10.5 0.742 0.453 0.673 -- -1.27 0.248 11.7 29.1 31 -- --
19.42 0.205 10.5 0.528 0.453 0.684 -- -- 0.184 11.8 27.76 38 -- --
20.4 0.21 10.5 0.868 -- 0.801 -- -1.65 0.251 -- 47.76 798 -- --
25.82 0.238 10.6 0.35 0.319 -- 0.271 -- 0.0505 10.1 -- -- -- --
26.11 0.239 10.6 0.361 0.318 -- -- -- 0.0509 10.1 -- -- -- --
22.54 0.221 10.5 0.57 -- 0.766 -- -- 0.199 -- 30.13 799 -- --
25.68 0.236 10.6 -- 0.379 0.491 -- -- 0.0882 10.7 24.7 30 -- --
32.21 0.265 10.6 0.357 -- -- -- -- 0.0506 -- -- -- -- --
29.54 0.254 10.6 -- 0.316 -- -- -- 0.0108 9.98 -- -- -- --
30.04 0.255 10.6 -- -- 0.562 -- -- 0.0811 -- 35.5 761 -- --
35.56 0.278 10.6 -- -- -- -- -- 0.011 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.94 radiation 1 14400 < th dose independent rect. 18 14
2 16.95 radiation 1 14400 < th dose independent rect. 18 12
3 16.95 temperature 10 720 > th dose dependent rect. 6 22
6 17.00 temperature 10 1440 > th dose dependent rect. 17 5
13 17.04 temperature 30 90 < th dose dependent rect. 11 23
16 17.05 temperature 15 720 > th dose dependent rect. 8 20
17 17.06 radiation 1 14400 > th dose independent rect. 18 15
18 17.06 temperature 30 1440 < th dose dependent rect. 17 5
21 17.06 temperature 30 10 < th dose dependent rect. 13 23
35 17.09 radiation 1 14400 > th dose independent rect. 18 1
46 17.10 humidity 90 14400 < th dose independent rect. 19 9
58 17.11 humidity 90 14400 > th dose dependent rect. 23 16
60 17.11 temperature 30 10 < th dose dependent rect. 3 23
61 17.12 temperature 10 1440 > th dose dependent rect. 20 1
66 17.12 humidity 90 14400 > th dose dependent rect. 24 14
73 17.12 temperature 30 720 < th dose dependent rect. 3 22
87 17.14 humidity 90 14400 > th dose independent rect. 19 9
99 17.14 humidity 90 14400 > th dose dependent rect. 13 17
105 17.14 temperature 15 720 > th dose dependent rect. 9 23
126 17.16 temperature 10 720 > th dose dependent rect. 15 23
128 17.17 temperature 10 1440 > th dose dependent sin 17 NA
129 17.17 humidity 90 14400 > th dose dependent sin 7 NA
158 17.19 humidity 90 14400 > th dose dependent rect. 17 11
174 17.20 humidity 90 14400 > th dose dependent sin 11 NA
181 17.20 temperature 10 1440 > th dose dependent rect. 11 13
240 17.23 wind 3 43200 > th dose independent rect. 12 2
268 17.24 humidity 90 14400 > th dose independent rect. 21 6
271 17.24 temperature 30 30 < th dose dependent no NA NA
317 17.25 radiation 1 14400 < th dose dependent rect. 18 17
339 17.26 temperature 10 1440 > th dose dependent rect. 4 19
347 17.27 radiation 1 14400 < th dose independent rect. 18 7
350 17.27 humidity 90 14400 < th dose independent rect. 19 12
353 17.27 humidity 90 14400 > th dose dependent rect. 21 6
383 17.28 humidity 90 14400 > th dose independent sin 10 NA
384 17.28 radiation 1 14400 < th dose independent sin 10 NA
388 17.28 temperature 15 720 > th dose dependent no NA NA
423 17.29 radiation 1 14400 < th dose independent rect. 18 1
460 17.29 temperature 30 30 < th dose dependent rect. 15 23
465 17.30 wind 3 43200 < th dose independent rect. 11 3
466 17.30 radiation 1 14400 > th dose independent rect. 5 4
467 17.30 radiation 1 14400 < th dose independent rect. 5 4
545 17.32 temperature 30 1440 < th dose dependent sin 16 NA
550 17.32 wind 3 43200 < th dose dependent rect. 9 3
579 17.33 radiation 1 14400 > th dose independent sin 10 NA
584 17.33 humidity 80 43200 < th dose dependent rect. 21 2
616 17.34 humidity 90 14400 < th dose independent sin 10 NA
668 17.35 temperature 30 1440 < th dose dependent rect. 11 13
696 17.35 temperature 30 30 < th dose dependent rect. 21 23
747 17.37 radiation 1 14400 > th dose independent rect. 5 7
748 17.37 radiation 1 14400 < th dose independent rect. 5 7
749 17.37 humidity 90 14400 > th dose independent rect. 23 12
776 17.38 wind 3 43200 > th dose independent rect. 10 5
783 17.38 wind 3 43200 > th dose independent rect. 9 7
829 17.39 wind 3 43200 < th dose independent rect. 9 6
834 17.39 radiation 1 14400 < th dose dependent sin 9 NA
839 17.39 radiation 1 14400 < th dose dependent rect. 4 8
848 17.39 temperature 30 1440 < th dose dependent rect. 7 16
927 17.40 temperature 10 1440 > th dose dependent rect. 20 23
944 17.41 radiation 1 14400 < th dose dependent rect. 4 5