BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0326300 Os08g0326300|AK099609
(936 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 149 7e-36
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 137 3e-32
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 93 8e-19
AT1G52520.1 | chr1:19565933-19568248 FORWARD LENGTH=704 54 5e-07
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 135/549 (24%), Positives = 244/549 (44%), Gaps = 40/549 (7%)
Query: 293 DDPPMIVGSSYGSMVEFRSAVRQHAIKGQFELGTEKSDPERFRGYCKAEGCPWAIVARLM 352
DD M +G + E + AV I+ + +++ E + C C W++ A M
Sbjct: 181 DDHDMHLGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARM 240
Query: 353 PDGKSVKVTLNRFAHACTSIEGVKTKMVSYKWVAEKAIPFLKKDPNMGAKKLKEELETKY 412
+ V++T H C+ ++ A++ ++ P + +LK+ + K
Sbjct: 241 EEHGLVEITKYTGPHTCSH---EYPNDFESEFAADEIERVVRIQPTLSIAELKKWWKEKT 297
Query: 413 NVTVGYSKVWQGRQKAVEQIFGSWEESYLFNFKAEVELKMPGSVV---EIDVQEDDDGIY 469
+ SK+ G+ + ++++FG ++S+ K ++ + D+ + D
Sbjct: 298 GYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFPNPDFAS 357
Query: 470 FCRFFCAFKPCIDGFMNGCRPYLSIDSTAFNGKWNGHLPFVTSIDGHNWMFPVAFGFFQS 529
F F +F I+GF + CRP + +D+ + NGK+ L + +D N FP+AF +
Sbjct: 358 FRGVFWSFSQSIEGFQH-CRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKE 416
Query: 530 ETTDNWTWFMQQLHKAIGKPSHLAISSEACKGLENAVK---SVF--PWAEHRECFCHLMQ 584
+TD+W WF ++ + + + L + S + + V S++ PWA H+ C HL
Sbjct: 417 VSTDSWRWFFTKIREKVTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRS 476
Query: 585 NFVEKFPGPMYGNMYPAARSYMQ-DRFEHYMNIIHETNSDVKPYLETYHKLLWMRSKFSE 643
F+ F ++ A S Q + F+ YMN I E N + +L+ + W + S
Sbjct: 477 QFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHDS- 535
Query: 644 EIKCDFISNNLADLWNKWIKDMKDLPVAELA---------DAIRSKIMDLLARRKKIGEK 694
++ I + L+ + P +A D +RS L+ I
Sbjct: 536 GLRYGIIEIDREALFAV----CRGFPYCTVAMTGGVMLMFDELRSSFDKSLS---SIYSS 588
Query: 695 LDGEML---PIIVRQLNAMTRSLGHLRVVQGDRDQAEVAEITPEHEIIRHRVNLAKHTCT 751
L+ ++ P + + MT S+ ++ + Q +RD +V+E + + E I V L TCT
Sbjct: 589 LNRGVVYTEPFMDKLEEFMTDSIPYV-ITQLERDSFKVSESSEKEEWI---VQLNVSTCT 644
Query: 752 CREWQVSGKPCPHALALIISTR-NPRMADYLDPCYSVQKYKLAYAGVIHPLSDKSQWPKV 810
CR++Q PC HALA+ + NP Y+D CY+V++Y YA P+ D + WP+
Sbjct: 645 CRKFQSYKFPCLHALAVFEKLKINP--LQYVDECYTVEQYCKTYAATFSPVPDVAAWPED 702
Query: 811 NLGFNLLPP 819
L PP
Sbjct: 703 CRVPTLFPP 711
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 141/599 (23%), Positives = 251/599 (41%), Gaps = 38/599 (6%)
Query: 236 DFLGLRTEDERAD-QARLEAEKQRDS-APGPAPRLAQRDLNLDEAEIDARFEAEIFYDRD 293
D LG ++ ++ D +LE E R+S + G + LN D D
Sbjct: 129 DILGGSSKRQKTDIHVKLERETDRNSESDGVVHLVDSSTLNKDSISGHVSKPCMSSLWLD 188
Query: 294 DPPMIVGSSYGSMVEFRSAVRQHAIKGQFELGTEKSDPERFRGYCKAEGCPWAIVARLMP 353
D + VG + E + AV ++K Q + ++ + + C C W++ A M
Sbjct: 189 DHDLRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMK 248
Query: 354 DGKSVKVTLNRFAHACTSI--EGVKTKMVSYKWVAEKAIPFLKKDPNMGAKKLKEELETK 411
V++ H C I E K++ + + E+A+ ++ P +LK+ + K
Sbjct: 249 KHGLVEIIKYTGPHTCHPIVPEDFKSEFETDE--IERAVRYM---PTQTISELKKWWKKK 303
Query: 412 YNVTVGYSKVWQGRQKAVEQIFGSWEESYLFNFKAEVELKMPGSVV---EIDVQEDDDGI 468
+ S V ++KA++++FG W++S+ K L ++ + D+ + +
Sbjct: 304 IGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPNFA 363
Query: 469 YFCRFFCAFKPCIDGFMNGCRPYLSIDSTAFNGKWNGHLPFVTSIDGHNWMFPVAFGFFQ 528
FC F AF I+GF + CRP + +D+ N ++ L + +D N FP+AF +
Sbjct: 364 SFCGVFWAFPQSIEGFQH-CRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTK 422
Query: 529 SETTDNWTWFMQQLHKAIGKPSHLAISSEACKGL-----ENAVKSVFPWAEHRECFCHLM 583
+TD W WF+ + + + + L + S + E+ + PWA HR H
Sbjct: 423 EVSTDIWRWFLTGIREKVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFY 482
Query: 584 QNFVEKFPGPMYG-NMYPAARSYMQDRFEHYMNIIHETNSDVKPYLETYHKLLWMRSK-- 640
F FP G + A + +D F YMN I E N + + +L+ + + W +
Sbjct: 483 SQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDN 542
Query: 641 ------FSEEIKCDFISNNLADLWNKWIKDMKDLPVAELADAIRSKIMDLLARRKKIGEK 694
K F N + + V L D +RSK + +
Sbjct: 543 GRRYGIMEINTKALFAVCNAFEQAGHVVTG----SVLLLFDELRSKFDKSFSCSRSSLNC 598
Query: 695 LDGEMLPIIVRQLNAMTRSLGHLRVVQG-DRDQAEVAEITPEHEIIRHRVNLAKHTCTCR 753
D P++ + T + + +V D + +VA + E I V L+ +CTC
Sbjct: 599 GDVYTEPVMDKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECI---VQLSDCSCTCG 655
Query: 754 EWQVSGKPCPHALALIISTR-NPRMADYLDPCYSVQKYKLAYAGVIHPLSDKSQWPKVN 811
++Q PC HALA+ + NP Y+D CY++++ K YA + + + S WP+ +
Sbjct: 656 DFQRYKFPCLHALAVCKKLKFNP--LQYVDDCYTLERLKRTYATIFSHVPEMSAWPEAS 712
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 151/363 (41%), Gaps = 31/363 (8%)
Query: 297 MIVGSSYGSMVEFRSAVRQHAIKGQFELGTEKSDPERFRGYCKAEGCPWAIVARLMPDGK 356
M VG + + E + AV +IK + + +++ + + C+ C W+I A +
Sbjct: 180 MRVGLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDG 239
Query: 357 SVKVTLNRFAHAC--TSIEGVKTKMVSYKWVAEKAIPFLKKDPNMGAKKLKEELETKYNV 414
++T H C + + + ++ E+ + + P + +L + E K+
Sbjct: 240 LFEITECSGPHDCYPEHLNDFDAECIPFQ--IERVV---RVQPTLSTAELDKWWEKKFGF 294
Query: 415 TV-------GYSKVWQGRQKAVEQIFGSWEESYLFNFKAEVELKMPGSVVEIDVQ----- 462
+ V + KA+++ FG W++S+ K L ++ +D Q
Sbjct: 295 ALDQVVEHCSEGLVEDAKVKAIKRFFGDWDQSFRLIPKLMSVLHSSNGLL-VDWQYDSLT 353
Query: 463 EDDDGIYFCRFFCAFKPCIDGFMNGCRPYLSIDSTAFNGKWNGHLPFVTSIDGHNWMFPV 522
D + F F AF I GF + CRP + +D+ GK+ L ++ D N FP+
Sbjct: 354 HDPEHASFRGLFWAFSQSIQGFQH-CRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPL 412
Query: 523 AFGFFQSETTDNWTWFMQQLHKAIGKPSHLAISSEACKGL-----ENAVKSVFPWAEHRE 577
AF + + D+W WF+ ++ + + + + + S + E + PWA HR
Sbjct: 413 AFAVTKEVSVDSWRWFLTRIREKVTQRQGICLISSPDPDILAVINEPGSQWKEPWAYHRF 472
Query: 578 CFCHLMQNFVEKFPGPMYGNMY----PAARSYMQDRFEHYMNIIHETNSDVKPYLETYHK 633
C HL PG Y NM+ A S ++ F+ YM I E N + +L+ +
Sbjct: 473 CLYHLCSKLCSVSPGFDY-NMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPP 531
Query: 634 LLW 636
W
Sbjct: 532 HQW 534
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 743 VNLAKHTCTCREWQVSGKPCPHALALIISTR-NPRMADYLDPCYSVQKYKLAYAGVIHPL 801
V L TCTC E+Q + PC HALA+ + NP Y+D CY+V++Y Y+ P+
Sbjct: 652 VQLNDTTCTCGEFQKNKFPCLHALAVCDELKINP--LQYVDDCYTVERYHKTYSAKFSPV 709
Query: 802 SDKSQWPK 809
+ S WP+
Sbjct: 710 PELSAWPE 717
>AT1G52520.1 | chr1:19565933-19568248 FORWARD LENGTH=704
Length = 703
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 441 LFNFKAEVELKMPGSVVEIDVQEDDDGIYFCRFFCAFKPCIDGFMNGCRPYLS----IDS 496
++N+ ++L P +DV +D+G F+ D F Y IDS
Sbjct: 251 IYNYFCRMQLTNPNFFYLMDV--NDEGQLRNVFWA------DAFSKVSCSYFGDVIFIDS 302
Query: 497 TAFNGKWNGHLPFVTSIDGHNWMFPVAFGFFQSETTDNWTWFMQQLHKAIGKPSHLAISS 556
+ +GK+ L T ++ H ++ GF ET +++ W ++ + ++ K S I +
Sbjct: 303 SYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLK-VWLSVMKRSPQTIVT 361
Query: 557 EACKGLENAVKSVFPWAEHRECFCHLMQNFVEKFPG 592
+ CK LE A+ VFP + R H+M+ EK G
Sbjct: 362 DRCKPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGG 397
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 21,597,016
Number of extensions: 963450
Number of successful extensions: 2427
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2413
Number of HSP's successfully gapped: 7
Length of query: 936
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 828
Effective length of database: 8,145,641
Effective search space: 6744590748
Effective search space used: 6744590748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)