Os08g0323400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rubredoxin (Rd).
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Os08g0323400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rubredoxin (Rd).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.38 | 0.394 | 12.6 | -1.22 | 0.622 | -0.772 | -0.0267 | 1.49 | -0.905 | 23.7 | 90.02 | 206 | -- | -- |
| 73.88 | 0.4 | 12.6 | -1.16 | 0.673 | -0.685 | 0.257 | -- | -0.888 | 23.8 | 89.77 | 141 | -- | -- |
| 70.27 | 0.39 | 12.6 | -1.21 | 0.625 | -0.798 | -- | 1.55 | -0.909 | 23.6 | 90.51 | 199 | -- | -- |
| 74.15 | 0.401 | 12.6 | -1.17 | 0.664 | -0.674 | -- | -- | -0.887 | 23.6 | 90.09 | 141 | -- | -- |
| 89.79 | 0.441 | 12.6 | -1.25 | -- | -0.744 | -- | 0.911 | -0.897 | -- | 81.16 | 776 | -- | -- |
| 84.32 | 0.43 | 12.6 | -1.24 | 0.624 | -- | 0.0638 | -- | -0.766 | 21.7 | -- | -- | -- | -- |
| 84.34 | 0.43 | 12.6 | -1.24 | 0.623 | -- | -- | -- | -0.766 | 21.7 | -- | -- | -- | -- |
| 92.35 | 0.448 | 12.6 | -1.18 | -- | -0.738 | -- | -- | -0.854 | -- | 80.51 | 787 | -- | -- |
| 109.75 | 0.488 | 12.6 | -- | 0.66 | -0.75 | -- | -- | -0.78 | 23.8 | 89.66 | 165 | -- | -- |
| 107.47 | 0.484 | 12.6 | -1.23 | -- | -- | -- | -- | -0.767 | -- | -- | -- | -- | -- |
| 124.79 | 0.523 | 12.6 | -- | 0.621 | -- | -- | -- | -0.628 | 21.6 | -- | -- | -- | -- |
| 128.14 | 0.527 | 12.6 | -- | -- | -0.849 | -- | -- | -0.757 | -- | 83.62 | 766 | -- | -- |
| 147.56 | 0.567 | 12.6 | -- | -- | -- | -- | -- | -0.63 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.16 | humidity | 90 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 2 | 70.17 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 70.17 | humidity | 90 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 9 | 70.36 | humidity | 90 | 90 | > th | dose dependent | rect. | 23 | 15 |
| 12 | 70.42 | humidity | 90 | 90 | > th | dose dependent | rect. | 23 | 13 |
| 15 | 70.46 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 17 | 70.48 | humidity | 90 | 270 | > th | dose dependent | sin | 11 | NA |
| 26 | 70.65 | humidity | 90 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 35 | 70.71 | humidity | 90 | 90 | > th | dose dependent | sin | 7 | NA |
| 47 | 70.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 49 | 70.85 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 51 | 70.86 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 58 | 70.88 | humidity | 90 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 79 | 70.95 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 95 | 71.07 | humidity | 90 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 115 | 71.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 149 | 71.27 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 154 | 71.28 | humidity | 90 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 156 | 71.30 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 187 | 71.37 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 192 | 71.40 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 203 | 71.44 | radiation | 20 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 317 | 71.76 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 342 | 71.91 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 370 | 72.05 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 377 | 72.06 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 383 | 72.07 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 387 | 72.08 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 446 | 72.28 | humidity | 90 | 90 | > th | dose independent | sin | 7 | NA |
| 460 | 72.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 510 | 72.41 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 522 | 72.43 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 550 | 72.51 | humidity | 90 | 270 | > th | dose independent | rect. | 21 | 9 |
| 571 | 72.53 | humidity | 90 | 90 | < th | dose independent | rect. | 22 | 14 |
| 580 | 72.54 | radiation | 40 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 595 | 72.55 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 11 |
| 617 | 72.61 | humidity | 90 | 90 | > th | dose independent | rect. | 24 | 7 |
| 642 | 72.64 | radiation | 10 | 1440 | < th | dose independent | sin | 18 | NA |
| 651 | 72.66 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 671 | 72.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 686 | 72.71 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 693 | 72.72 | humidity | 90 | 270 | > th | dose independent | sin | 10 | NA |
| 728 | 72.78 | humidity | 90 | 90 | > th | dose independent | rect. | 24 | 14 |
| 740 | 72.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 789 | 72.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 837 | 72.88 | radiation | 1 | 90 | > th | dose dependent | sin | 6 | NA |
| 873 | 72.96 | humidity | 90 | 90 | > th | dose independent | rect. | 24 | 12 |
| 903 | 73.00 | wind | 1 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 916 | 73.02 | humidity | 90 | 90 | < th | dose independent | sin | 6 | NA |
| 933 | 73.04 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 995 | 73.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 23 |