BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0323400 Os08g0323400|AK068722
         (217 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54500.1  | chr1:20357084-20357671 REVERSE LENGTH=196          172   8e-44

>AT1G54500.1 | chr1:20357084-20357671 REVERSE LENGTH=196
          Length = 195

 Score =  172 bits (437), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 87/95 (91%)

Query: 105 VDPRRLEEKFAVLNTGVYECRSCGYRYDQAAGDPSYPVPPGLPFEQLPDDWRCPTCGAAQ 164
           ++ RR+EEKFAVLNTG+YECRSCGY+YD++AGDPSYP+PPG  F++LP+DWRCPTCGAAQ
Sbjct: 83  IEKRRMEEKFAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQ 142

Query: 165 SFFESKSVEIAGFAQNQQFGLGGNSLTGDQKALLI 199
           SFFESK VEIAGFAQNQQ+GLGGN+LT  QK  LI
Sbjct: 143 SFFESKMVEIAGFAQNQQYGLGGNALTSGQKTGLI 177



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,326,150
Number of extensions: 107072
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)