Os08g0282400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-SNAP (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os08g0282400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-SNAP (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.81 | 0.161 | 13.9 | 0.276 | 0.378 | -0.304 | -0.0635 | 0.401 | 0.081 | 23.6 | 24.97 | 3977 | -- | -- |
| 11.96 | 0.161 | 13.9 | 0.375 | 0.374 | -0.277 | -0.0802 | -- | 0.092 | 23.6 | 24.5 | 3933 | -- | -- |
| 11.83 | 0.16 | 13.9 | 0.277 | 0.378 | -0.302 | -- | 0.406 | 0.0816 | 23.6 | 25 | 3976 | -- | -- |
| 11.99 | 0.161 | 13.9 | 0.381 | 0.378 | -0.277 | -- | -- | 0.0941 | 23.5 | 24.5 | 3933 | -- | -- |
| 20.52 | 0.211 | 13.9 | 0.305 | -- | -0.383 | -- | 0.243 | 0.0509 | -- | 24.8 | 3781 | -- | -- |
| 13.92 | 0.175 | 13.9 | 0.49 | 0.414 | -- | -0.0747 | -- | 0.171 | 23.6 | -- | -- | -- | -- |
| 13.94 | 0.175 | 13.9 | 0.493 | 0.415 | -- | -- | -- | 0.171 | 23.6 | -- | -- | -- | -- |
| 20.04 | 0.208 | 13.9 | 0.335 | -- | -0.426 | -- | -- | 0.0649 | -- | 24.9 | 2372 | -- | -- |
| 12.21 | 0.163 | 13.9 | -- | 0.408 | -0.469 | -- | -- | 0.0119 | 23.6 | 17.99 | 47520 | -- | -- |
| 24.74 | 0.232 | 13.9 | 0.504 | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
| 20.34 | 0.211 | 13.9 | -- | 0.42 | -- | -- | -- | 0.116 | 23.7 | -- | -- | -- | -- |
| 22.68 | 0.222 | 13.9 | -- | -- | -0.478 | -- | -- | 0.00983 | -- | 18.14 | 47520 | -- | -- |
| 31.45 | 0.262 | 13.9 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 6 | 11.13 | temperature | 15 | 90 | > th | dose dependent | sin | 11 | NA |
| 7 | 11.13 | temperature | 10 | 270 | > th | dose dependent | sin | 13 | NA |
| 15 | 11.20 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 32 | 11.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 48 | 11.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 66 | 11.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 83 | 11.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 89 | 11.47 | temperature | 30 | 90 | < th | dose dependent | sin | 12 | NA |
| 91 | 11.48 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 16 |
| 112 | 11.52 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 137 | 11.57 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 14 |
| 141 | 11.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 153 | 11.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 163 | 11.60 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 15 |
| 189 | 11.64 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 254 | 11.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 291 | 11.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 300 | 11.74 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 320 | 11.76 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 321 | 11.76 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 322 | 11.76 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 326 | 11.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 11 |
| 332 | 11.77 | wind | 1 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 336 | 11.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 351 | 11.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 360 | 11.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 4 |
| 377 | 11.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 381 | 11.79 | wind | 1 | 1440 | > th | dose independent | sin | 5 | NA |
| 420 | 11.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 436 | 11.80 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 441 | 11.80 | temperature | 15 | 4320 | > th | dose dependent | sin | 14 | NA |
| 510 | 11.81 | wind | 1 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 583 | 11.82 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 665 | 11.83 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 16 |