BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0282400 Os08g0282400|AK100935
(289 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56190.1 | chr3:20846119-20848356 REVERSE LENGTH=290 338 3e-93
AT3G56450.1 | chr3:20930557-20932869 FORWARD LENGTH=382 196 1e-50
>AT3G56190.1 | chr3:20846119-20848356 REVERSE LENGTH=290
Length = 289
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 174/275 (63%), Positives = 220/275 (80%)
Query: 1 MGDHEARGDDFEKKAEKKLSGWGIFGSKYEDAADLFDKGANSFKLAKNWSRAAQVYIKIA 60
MGDH R ++FEKKAEKKL+GWGIFGSKYEDAADL +K ANS+KLAK+W +A + Y+K+A
Sbjct: 1 MGDHLVRAEEFEKKAEKKLNGWGIFGSKYEDAADLLEKAANSYKLAKSWDQAGKAYLKLA 60
Query: 61 NCHLKGDSKHEAASAYVEAANCYKKFSPQEAAQALNQAVDLFLEIGRLNMAARYCKDIGE 120
+CHLK DSKH+AA+AY EAA CYKK EAA L +AV++F EIGRLNMAARY K+I E
Sbjct: 61 DCHLKSDSKHDAANAYAEAAKCYKKVDTNEAASCLERAVNIFCEIGRLNMAARYYKEIAE 120
Query: 121 IYHQEQDLEKASDYLEKSADLFDSEGQSSQSNSIKQKVAEIAAQLEQYQKANEIFEAIAR 180
Y +Q E+A Y EK+A+ F +E ++ +N KVA+ AAQLEQY+KA +I+E IAR
Sbjct: 121 YYESDQKFEQAIAYFEKAAEFFQNEEVTTSANQCNLKVAQYAAQLEQYEKAIKIYEDIAR 180
Query: 181 QQINNNLLKYSVRGILLNAGICQLCRGDVVAITNSMERYQDIDPTFSGTREYKLLSDLAA 240
+NNNLLKY V+G LL AG+C LC+ DVV+ITN++E+YQD+DPTF+GTRE K L+DLA+
Sbjct: 181 HSLNNNLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFTGTRECKFLADLAS 240
Query: 241 AMEEGDVAKFTDAIKEFDSMTRLDPWKTTLLLRAK 275
A++E D+AKFTD +KEFDSMT LD WKTT+LLR K
Sbjct: 241 AIDEEDIAKFTDVVKEFDSMTPLDSWKTTMLLRVK 275
>AT3G56450.1 | chr3:20930557-20932869 FORWARD LENGTH=382
Length = 381
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/253 (43%), Positives = 155/253 (61%), Gaps = 37/253 (14%)
Query: 11 FEKKAEKKLSGWGIFGSKYEDAADLFDKGANSFKLAKNWSRAAQVYIKIANCHLKGDSKH 70
F+KKAEKKL+ F +KYEDAADL +K +S+KLAK+W +A Y+K+A+CHLK +S
Sbjct: 99 FQKKAEKKLNRRRRFDTKYEDAADLLEKARDSYKLAKSWDQAGIAYLKLADCHLKANS-- 156
Query: 71 EAASAYVEAANCYKKFSPQEAAQALNQAVDLFLEIGRLNMAARYCKDIGEIYHQEQDLEK 130
AN Y +++ +D +I E Y ++ E+
Sbjct: 157 --------LANTY---------MIMDECMD---------------HEIAEYYESDEMFEQ 184
Query: 131 ASDYLEKSADLFDSEGQSSQSNSIKQKVAEIAAQLEQYQKANEIFEAIARQQINNNLLKY 190
A Y E +A+ F E ++ +N KVA+ A+QLEQ + + AR +NN LLKY
Sbjct: 185 AIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQ---QSRFMKTQARHSLNNKLLKY 241
Query: 191 SVRGILLNAGICQLCRGDVVAITNSMERYQDIDPTFSGTREYKLLSDLAAAMEEGDVAKF 250
V+G LL AG+C LC+ DVV+ITN++E+YQD+DPTFSGTRE K L+DLA+A++E D+AKF
Sbjct: 242 GVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFSGTRECKFLADLASAIDEEDIAKF 301
Query: 251 TDAIKEFDSMTRL 263
TD KE DS++ L
Sbjct: 302 TDVSKEIDSVSPL 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,349,571
Number of extensions: 204632
Number of successful extensions: 821
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)