FiT-DB / Search/ Help/ Sample detail

Os08g0276100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14 (0.0283) R2 : 0.912
β1 : -0.896 (0.104) R2dD : 0.015 R2D : 0.00411
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.14 (0.0604) R2dE : 0.906 R2E : 0.894
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.306 (0.0604) R2dN8 : 0.00664 R2N8 : -0.00249
σ : 0.529
deviance : 128.8
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 88.88
memory length : 913
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.51 0.498 14 -0.87 4.61 -2.26 1.45 0.0992 -0.285 1.28 31.92 247 19 18
112.53 0.494 14 -0.865 4.6 -2.26 1.47 -- -0.285 1.29 31.99 247 19 18
120.99 0.512 14 -0.901 4.6 -2.26 -- 0.306 -0.293 1.28 32 245 19 18
121.31 0.513 14 -0.901 4.6 -2.26 -- -- -0.293 1.28 32 245 19 18
143 0.557 14 -0.912 -- -4.1 -- 0.865 -0.295 -- 65.86 914 19 18
214.55 0.687 14 -0.741 4.44 -- 1.2 -- -0.199 23.6 -- -- -- --
220.82 0.696 14 -0.789 4.43 -- -- -- -0.204 23.6 -- -- -- --
128.8 0.529 14 -0.896 -- -4.14 -- -- -0.306 -- 88.88 913 19.1 18
143.1 0.557 14 -- 4.57 -2.21 -- -- -0.21 1.25 32.73 241 19.1 17.9
1455.61 1.78 13.9 -0.666 -- -- -- -- -0.153 -- -- -- -- --
237.23 0.72 14 -- 4.42 -- -- -- -0.116 23.6 -- -- -- --
149.87 0.57 13.9 -- -- -4.11 -- -- -0.213 -- 94.63 912 19 18
1467.3 1.79 13.9 -- -- -- -- -- -0.079 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.65 temperature 30.0 270 < th dose independent rect. 19 18
2 117.73 wind 1.0 270 > th dose independent rect. 13 6
3 119.17 wind 9.0 270 < th dose independent rect. 13 6
4 119.31 temperature 10.0 270 > th dose independent rect. 13 6
6 119.31 atmosphere 1010.0 270 < th dose independent rect. 13 6
8 119.31 temperature 10.0 270 > th dose independent rect. 19 18
9 119.31 atmosphere 995.0 270 > th dose independent rect. 19 18
10 119.49 wind 9.0 270 < th dose independent rect. 19 18
11 119.83 precipitation 0.1 270 < th dose independent rect. 13 6
12 119.83 precipitation 0.1 270 < th dose dependent rect. 13 6
13 120.15 precipitation 0.1 270 < th dose independent rect. 19 18
14 120.15 precipitation 0.1 270 < th dose dependent rect. 19 18
19 123.86 humidity 50.0 270 > th dose independent rect. 19 18
20 123.96 atmosphere 995.0 270 > th dose independent rect. 13 6
31 124.58 atmosphere 1010.0 270 < th dose independent rect. 24 8
37 124.69 temperature 10.0 270 > th dose dependent rect. 13 6
49 125.44 temperature 10.0 270 > th dose independent rect. 18 7
50 125.44 humidity 50.0 270 > th dose independent rect. 18 7
51 125.44 radiation 20.0 270 < th dose independent rect. 18 7
54 125.44 temperature 10.0 270 > th dose independent rect. 1 17
55 125.44 atmosphere 1015.0 270 < th dose independent rect. 1 17
56 125.46 radiation 40.0 270 < th dose dependent rect. 18 7
58 125.49 wind 9.0 270 < th dose independent rect. 18 7
60 125.53 radiation 1.0 270 < th dose independent rect. 17 8
63 125.86 wind 9.0 270 < th dose independent rect. 1 17
67 126.27 atmosphere 995.0 270 > th dose independent rect. 18 7
72 126.46 precipitation 0.1 270 < th dose independent rect. 5 9
73 126.46 precipitation 0.1 270 < th dose dependent rect. 5 9
76 126.52 temperature 10.0 10 > th dose dependent rect. 15 6
81 127.09 temperature 10.0 270 > th dose independent rect. 6 8
82 127.09 atmosphere 995.0 270 > th dose independent rect. 6 8
83 127.09 atmosphere 1015.0 270 < th dose independent rect. 6 8
84 127.09 temperature 10.0 270 > th dose independent rect. 14 16
85 127.30 wind 9.0 270 < th dose independent rect. 14 16
96 127.51 precipitation 0.1 270 < th dose independent rect. 1 17
97 127.51 precipitation 0.1 270 < th dose dependent rect. 1 17
98 127.54 wind 9.0 270 < th dose independent rect. 6 8
99 127.59 temperature 15.0 270 > th dose independent rect. 23 9
100 127.60 radiation 40.0 270 < th dose independent rect. 24 8
103 127.79 precipitation 0.1 270 < th dose independent rect. 18 7
105 127.79 precipitation 0.1 270 < th dose dependent rect. 18 7
110 127.90 humidity 70.0 270 > th dose independent rect. 24 8
116 127.95 wind 9.0 270 < th dose independent rect. 24 8
118 127.95 temperature 30.0 270 < th dose independent rect. 24 8
119 127.95 humidity 50.0 270 > th dose independent rect. 24 8
121 127.95 atmosphere 995.0 270 > th dose independent rect. 24 8
123 127.95 temperature 10.0 270 > th dose independent rect. 8 16
132 128.13 radiation 1.0 270 > th dose independent rect. 6 7
137 128.28 temperature 30.0 270 < th dose independent rect. 18 7
140 128.32 radiation 40.0 270 < th dose dependent rect. 24 8
150 128.73 radiation 40.0 10 < th dose independent rect. 15 6
151 128.77 wind 1.0 10 > th dose independent rect. 15 6
152 128.79 temperature 10.0 10 > th dose independent rect. 15 6
154 128.79 atmosphere 1010.0 10 < th dose independent rect. 15 6
156 128.79 temperature 10.0 10 > th dose independent rect. 21 18
157 128.79 atmosphere 995.0 10 > th dose independent rect. 21 18
158 128.83 precipitation 0.1 10 < th dose independent rect. 15 6
159 128.83 precipitation 0.1 10 < th dose dependent rect. 15 6
164 129.05 wind 9.0 270 < th dose independent rect. 8 16
178 129.26 wind 9.0 10 < th dose independent rect. 15 6
184 129.28 radiation 40.0 270 < th dose independent rect. 14 3
192 129.32 precipitation 0.1 270 < th dose independent rect. 24 8
194 129.32 precipitation 0.1 270 < th dose dependent rect. 24 8
199 129.41 wind 1.0 270 > th dose independent rect. 14 3
200 129.41 precipitation 0.1 270 < th dose independent rect. 14 16
201 129.41 precipitation 0.1 270 < th dose dependent rect. 14 16
203 129.48 temperature 10.0 1440 > th dose independent rect. 16 6
206 129.48 temperature 10.0 1440 > th dose independent rect. 22 18
210 129.54 precipitation 0.1 30 < th dose independent rect. 21 18
211 129.54 precipitation 0.1 30 < th dose dependent rect. 21 18
220 129.68 temperature 10.0 270 > th dose independent rect. 15 2
222 129.68 atmosphere 1010.0 270 < th dose independent rect. 15 2
224 129.68 temperature 10.0 270 > th dose independent rect. 17 22
225 129.69 wind 9.0 270 < th dose independent rect. 15 2
231 129.72 radiation 1.0 270 > th dose independent rect. 13 5
243 129.85 precipitation 0.1 270 < th dose independent rect. 15 2
244 129.85 precipitation 0.1 270 < th dose dependent rect. 15 2
245 129.90 wind 9.0 30 < th dose independent rect. 21 18
272 130.00 radiation 40.0 90 < th dose independent rect. 13 8
279 130.09 atmosphere 995.0 270 > th dose independent rect. 1 17
325 130.68 radiation 1.0 270 > th dose independent rect. 4 9
348 130.75 temperature 30.0 270 < th dose independent rect. 19 5
369 130.82 radiation 40.0 270 < th dose independent rect. 14 16
371 130.88 radiation 1.0 270 > th dose independent rect. 18 20
442 131.45 radiation 40.0 270 < th dose independent rect. 13 5
468 131.77 precipitation 0.1 270 < th dose independent rect. 8 16
471 131.77 precipitation 0.1 270 < th dose dependent rect. 8 16
484 131.99 temperature 30.0 270 < th dose independent rect. 6 7
485 131.99 temperature 10.0 270 > th dose dependent rect. 15 1
499 132.22 atmosphere 995.0 270 > th dose dependent rect. 6 7
560 133.04 humidity 90.0 270 < th dose independent rect. 13 6
577 133.31 atmosphere 995.0 270 > th dose independent rect. 13 17
606 133.80 humidity 90.0 270 < th dose independent rect. 15 2
608 133.81 atmosphere 995.0 270 > th dose independent rect. 15 2
610 133.82 wind 1.0 270 > th dose independent rect. 18 7
613 133.84 radiation 40.0 30 < th dose dependent rect. 15 17
615 133.86 radiation 1.0 270 > th dose independent sin 16 NA
656 134.16 atmosphere 995.0 10 > th dose independent rect. 15 6
698 134.33 radiation 1.0 270 < th dose dependent sin 16 NA
708 134.50 temperature 10.0 270 > th dose dependent rect. 13 17
722 134.62 humidity 50.0 270 > th dose independent rect. 6 7
725 134.70 atmosphere 995.0 90 > th dose dependent rect. 8 7
741 134.91 wind 1.0 270 > th dose independent rect. 19 5
852 135.78 precipitation 0.1 90 < th dose independent rect. 8 7
858 135.78 precipitation 0.1 90 < th dose dependent rect. 8 7
862 135.83 atmosphere 1015.0 270 < th dose independent rect. 13 17
865 135.85 radiation 40.0 90 < th dose dependent rect. 2 17
869 135.95 humidity 50.0 270 > th dose dependent rect. 18 6
880 136.09 wind 1.0 270 > th dose independent rect. 19 18
881 136.09 atmosphere 1015.0 270 < th dose independent rect. 19 18
885 136.18 radiation 20.0 10 < th dose independent rect. 2 19
889 136.21 temperature 10.0 90 > th dose independent rect. 8 7
890 136.21 atmosphere 1015.0 90 < th dose independent rect. 8 7
893 136.24 atmosphere 995.0 90 > th dose independent rect. 8 7
904 136.36 radiation 1.0 270 < th dose independent sin 16 NA
907 136.37 wind 1.0 270 > th dose independent rect. 6 7
919 136.45 temperature 10.0 90 > th dose dependent rect. 15 15
955 136.91 wind 1.0 270 > th dose independent rect. 13 16
995 137.16 temperature 10.0 90 > th dose dependent rect. 15 17