BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0276100 Os08g0276100|AK105984
         (469 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15980.1  | chr1:5489314-5491199 FORWARD LENGTH=462            484   e-137

>AT1G15980.1 | chr1:5489314-5491199 FORWARD LENGTH=462
          Length = 461

 Score =  484 bits (1247), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/396 (60%), Positives = 297/396 (75%), Gaps = 4/396 (1%)

Query: 52  NPWLXXXXXXXXXXXXYRGAFSGGKQEEDPRPPEDPANPYGFLRFPAGYNPELDSLASKX 111
           NPWL            Y   F+ GKQ+EDPRPP++P NPYGFL+FP GY  EL SL  K 
Sbjct: 52  NPWLDPFDSGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKI 111

Query: 112 XXXXXXXXXXXSGGVYENVLFFPVVQLLRDRYPGVVVDVVASARGKQVYEMCKNVRYADV 171
                      SGGVYEN+LFFP +QL++DRYPGV VD++ + RGKQ YE+ KNVR+A+V
Sbjct: 112 RGDVRRCCCVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANV 171

Query: 172 YDPDDDWPEPAEYTHQLGVLKNRYYDLIISTKLAGIGHALFLFMSSARDKVGYVYPNVNS 231
           YDPDD WPEPAEYT  +G+LK RYYD+++STKLAG+GHA FLFM++ARD+V Y+YPNVNS
Sbjct: 172 YDPDDHWPEPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNS 231

Query: 232 AGAGLFLTEMFRPPTTNLADSGYNMYQDMLEWIGRPAKGVPEHPVPPLRVSISKKLRAFV 291
           AGAGL L+E F    TNL++ GY+MY  M +W+GRP + VP  P+ PLRVSIS+K++  V
Sbjct: 232 AGAGLMLSETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVV 291

Query: 292 EDKYSRAGVEKGKFVVVHGIASDSFANMRSRGDDDCLLPLEHWAEIAKEISSEDNGLKPL 351
             KY  AG   GKF+V+HGI SDS A+M+S+GD D LL LE WA+I K +     G KP+
Sbjct: 292 AAKYRNAGAVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGV----RGFKPV 347

Query: 352 FVIPHQKHREEVEETVGKDTNILFITTPGQLTCLINDSVGVVATNTAAVQLANARDKPCV 411
           FVIPH+K RE VE+ VG DT+I+FITTPGQL  LINDS GV+ATNTAA+QLANARDKPC+
Sbjct: 348 FVIPHEKERENVEDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCI 407

Query: 412 ALFSSKEKARLFLPYLEEKKGCTVVASETGKLIDID 447
            LFSS+EK +LF+PY EEK  C ++AS+TGKL DID
Sbjct: 408 GLFSSEEKGKLFVPYAEEKSNCVIIASKTGKLADID 443



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,658,244
Number of extensions: 394415
Number of successful extensions: 976
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 975
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 367
Effective length of database: 8,310,137
Effective search space: 3049820279
Effective search space used: 3049820279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)