Os08g0276000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transmembrane protein TM9SF3 (Fragment).
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Os08g0276000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transmembrane protein TM9SF3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.89 | 0.558 | 7.92 | -1.53 | 1.16 | 0.755 | 0.736 | 0.547 | -0.112 | 1.67 | 31.43 | 1202 | -- | -- |
| 140.9 | 0.553 | 7.93 | -1.62 | 1.16 | 0.816 | 0.739 | -- | -0.112 | 1.68 | 31.46 | 1201 | -- | -- |
| 142.89 | 0.557 | 7.91 | -1.53 | 1.16 | 0.76 | -- | 0.712 | -0.113 | 1.68 | 31.42 | 1172 | -- | -- |
| 142.95 | 0.557 | 7.93 | -1.65 | 1.16 | 0.836 | -- | -- | -0.114 | 1.68 | 31.4 | 1181 | -- | -- |
| 221.84 | 0.694 | 7.88 | -1.47 | -- | 0.946 | -- | 1.11 | -0.0476 | -- | 31.58 | 1158 | -- | -- |
| 173.58 | 0.618 | 7.96 | -1.4 | 1.29 | -- | 0.952 | -- | -0.274 | 1.63 | -- | -- | -- | -- |
| 177.18 | 0.623 | 7.97 | -1.43 | 1.29 | -- | -- | -- | -0.279 | 1.62 | -- | -- | -- | -- |
| 221.86 | 0.694 | 7.91 | -1.66 | -- | 1.08 | -- | -- | -0.0471 | -- | 31.4 | 1163 | -- | -- |
| 211.76 | 0.678 | 7.9 | -- | 1.16 | 0.624 | -- | -- | 0.0141 | 1.6 | 32.36 | 1136 | -- | -- |
| 278.98 | 0.78 | 7.95 | -1.38 | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
| 230.91 | 0.711 | 7.93 | -- | 1.27 | -- | -- | -- | -0.12 | 1.58 | -- | -- | -- | -- |
| 291.6 | 0.795 | 7.87 | -- | -- | 0.871 | -- | -- | 0.0856 | -- | 31.9 | 1156 | -- | -- |
| 328.91 | 0.847 | 7.92 | -- | -- | -- | -- | -- | -0.0981 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.68 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 2 | 134.66 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 16 | 135.29 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 19 | 135.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 20 | 135.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 23 | 135.76 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 27 | 135.84 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 5 |
| 33 | 135.92 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 37 | 135.92 | wind | 7 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 50 | 136.12 | wind | 5 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 51 | 136.16 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 52 | 136.22 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 57 | 136.30 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 64 | 136.67 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 80 | 136.73 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 102 | 136.94 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 103 | 136.94 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 104 | 136.97 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 119 | 137.24 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 124 | 137.39 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 128 | 137.49 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 130 | 137.50 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 135 | 137.52 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 141 | 137.54 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 145 | 137.58 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 169 | 137.80 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 192 | 137.96 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 215 | 138.13 | radiation | 40 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 217 | 138.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 222 | 138.24 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 252 | 138.45 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 276 | 138.56 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 305 | 138.73 | radiation | 40 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 326 | 138.86 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 356 | 139.16 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 359 | 139.17 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 380 | 139.41 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 13 |
| 383 | 139.45 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 411 | 139.60 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 420 | 139.66 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 437 | 139.77 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 439 | 139.78 | radiation | 40 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 442 | 139.79 | radiation | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 462 | 139.82 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 463 | 139.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 464 | 139.84 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 486 | 139.94 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 12 |
| 489 | 139.95 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 539 | 140.09 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 540 | 140.09 | wind | 3 | 43200 | > th | dose dependent | sin | 6 | NA |
| 544 | 140.13 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 554 | 140.13 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 560 | 140.19 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 593 | 140.25 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 603 | 140.31 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 606 | 140.32 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 611 | 140.33 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 7 |
| 619 | 140.36 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 631 | 140.41 | wind | 5 | 43200 | < th | dose independent | sin | 5 | NA |
| 676 | 140.50 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 702 | 140.61 | wind | 5 | 43200 | > th | dose independent | sin | 5 | NA |
| 740 | 140.81 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 758 | 140.83 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 793 | 140.91 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 828 | 141.04 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 968 | 141.35 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 2 |