Os08g0266200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0266200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.59 | 0.233 | 10.8 | -0.0524 | 0.672 | -1.09 | 0.571 | -1.15 | -0.042 | 3.48 | 18.37 | 4890 | -- | -- |
| 25.68 | 0.236 | 10.8 | -0.107 | 0.681 | -0.754 | 0.602 | -- | -0.0494 | 3.43 | 18.4 | 4782 | -- | -- |
| 25.58 | 0.236 | 10.8 | -0.0563 | 0.676 | -1.1 | -- | -1.17 | -0.0439 | 3.58 | 18.34 | 4888 | -- | -- |
| 26.69 | 0.241 | 10.8 | -0.125 | 0.681 | -0.759 | -- | -- | -0.0607 | 3.55 | 18.4 | 4767 | -- | -- |
| 50.17 | 0.33 | 10.8 | -0.0726 | -- | -1.14 | -- | -1.05 | -0.048 | -- | 18.3 | 4053 | -- | -- |
| 33.24 | 0.27 | 10.8 | 0.319 | 0.683 | -- | 0.582 | -- | 0.103 | 3.44 | -- | -- | -- | -- |
| 34.28 | 0.274 | 10.8 | 0.309 | 0.688 | -- | -- | -- | 0.0995 | 3.54 | -- | -- | -- | -- |
| 49.43 | 0.327 | 10.9 | 0.0584 | -- | -0.672 | -- | -- | -0.123 | -- | 24.8 | 2658 | -- | -- |
| 26.94 | 0.242 | 10.8 | -- | 0.684 | -0.677 | -- | -- | -0.0363 | 3.58 | 18.5 | 4760 | -- | -- |
| 60.68 | 0.364 | 10.8 | 0.338 | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
| 36.8 | 0.284 | 10.8 | -- | 0.694 | -- | -- | -- | 0.0651 | 3.54 | -- | -- | -- | -- |
| 49.52 | 0.328 | 10.9 | -- | -- | -0.652 | -- | -- | -0.103 | -- | 24.49 | 2649 | -- | -- |
| 63.69 | 0.373 | 10.8 | -- | -- | -- | -- | -- | 0.0803 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.72 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 2 | 24.80 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 5 | 24.83 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 6 | 24.83 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 8 | 24.85 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 15 | 24.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 45 | 24.95 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 46 | 24.96 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 14 | NA |
| 54 | 24.97 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 14 | NA |
| 128 | 25.03 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 21 | 9 |
| 146 | 25.04 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 148 | 25.04 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 166 | 25.05 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 177 | 25.06 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 205 | 25.06 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 219 | 25.06 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 221 | 25.06 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 7 |
| 224 | 25.07 | atmosphere | 1015 | 14400 | < th | dose independent | no | NA | NA |
| 237 | 25.07 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 282 | 25.07 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 326 | 25.08 | atmosphere | 1015 | 14400 | > th | dose independent | no | NA | NA |
| 331 | 25.08 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 398 | 25.09 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 408 | 25.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 450 | 25.10 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 453 | 25.11 | humidity | 50 | 43200 | > th | dose independent | sin | 8 | NA |
| 454 | 25.11 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 475 | 25.11 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 10 | NA |
| 488 | 25.11 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 495 | 25.12 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 510 | 25.12 | humidity | 50 | 43200 | < th | dose dependent | sin | 8 | NA |
| 517 | 25.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 521 | 25.12 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 571 | 25.13 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 630 | 25.15 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 648 | 25.15 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 665 | 25.16 | humidity | 50 | 43200 | < th | dose independent | sin | 8 | NA |
| 744 | 25.18 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 799 | 25.20 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 830 | 25.21 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 2 | NA |
| 832 | 25.21 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 2 | NA |
| 835 | 25.21 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 836 | 25.21 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 837 | 25.21 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 838 | 25.21 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 841 | 25.21 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 859 | 25.21 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 4 | NA |
| 866 | 25.21 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 8 | 4 |
| 882 | 25.22 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 931 | 25.22 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 932 | 25.22 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 935 | 25.22 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 937 | 25.22 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 4 | 11 |