BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0266200 Os08g0266200|AK069687
         (97 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16170.1  | chr1:5538874-5539152 REVERSE LENGTH=93              79   7e-16
AT1G79660.1  | chr1:29976294-29976575 FORWARD LENGTH=94            74   1e-14

>AT1G16170.1 | chr1:5538874-5539152 REVERSE LENGTH=93
          Length = 92

 Score = 78.6 bits (192), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 59/101 (58%), Gaps = 13/101 (12%)

Query: 1  MVLDSL-SSPHRRSQNTFFLSSPKKLQSSKDDVGSWSALVERHRXXXXXXXXXXXXCTIY 59
          MVLD L SSP RR Q          L+   D++GSWS L++RH+            CT+Y
Sbjct: 1  MVLDGLVSSPSRRQQC---------LKKQWDELGSWSTLIQRHQYLLTALALLAFLCTVY 51

Query: 60 LYFAVTLGA-PDACSGLAGTEKAVCRAK--SALRHGKLKFF 97
          LYFAVTLGA   +C GL G +KA+C+ +   AL  GKLKFF
Sbjct: 52 LYFAVTLGARHSSCYGLTGKDKAMCQLQLVQALSKGKLKFF 92



>AT1G79660.1 | chr1:29976294-29976575 FORWARD LENGTH=94
          Length = 93

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 14/102 (13%)

Query: 1  MVLDSL-SSPHRRSQNTFFLSSPKKLQSSKDDVGSWSALVERHRXXXXXXXXXXXXCTIY 59
          MVLD + SSP RR         P  L+   DD+GS S +V+RHR            CTIY
Sbjct: 1  MVLDGIVSSPLRR---------PHALKKQWDDLGSCSTVVQRHRFLLTAMLLLAFLCTIY 51

Query: 60 LYFAVTLGAPD-ACSGLAGTEKAVCRA---KSALRHGKLKFF 97
          +YFAVTLGA    CSG+ G +KA+C+    +++  +GKLKFF
Sbjct: 52 IYFAVTLGARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKFF 93



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,782,177
Number of extensions: 47330
Number of successful extensions: 83
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 97
Length of database: 11,106,569
Length adjustment: 67
Effective length of query: 30
Effective length of database: 9,269,697
Effective search space: 278090910
Effective search space used: 278090910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)