Os08g0254500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Preprotein translocase secY subunit, chloroplast precursor (CpSecY).
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Os08g0254500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Preprotein translocase secY subunit, chloroplast precursor (CpSecY).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.54 | 0.392 | 11.8 | 0.127 | 1.53 | -0.0836 | -0.743 | -4.09 | -0.52 | 20 | 29.78 | 1608 | -- | -- |
| 77.45 | 0.41 | 11.9 | -0.454 | 1.46 | -0.295 | -1.19 | -- | -0.591 | 20 | 32.19 | 5284 | -- | -- |
| 71.15 | 0.393 | 11.8 | 0.149 | 1.54 | -0.0799 | -- | -3.98 | -0.52 | 20 | 29.79 | 1565 | -- | -- |
| 75.95 | 0.406 | 11.9 | -0.629 | 1.52 | -0.425 | -- | -- | -0.608 | 20 | 31.5 | 2935 | -- | -- |
| 194.45 | 0.649 | 11.8 | 0.299 | -- | -0.245 | -- | -3.7 | -0.4 | -- | 28.7 | 2078 | -- | -- |
| 82.77 | 0.427 | 11.9 | -0.532 | 1.54 | -- | -0.712 | -- | -0.666 | 20.1 | -- | -- | -- | -- |
| 84.3 | 0.43 | 11.9 | -0.512 | 1.54 | -- | -- | -- | -0.666 | 20.1 | -- | -- | -- | -- |
| 178.27 | 0.622 | 11.9 | -0.806 | -- | -1.07 | -- | -- | -0.807 | -- | 28.29 | 2089 | -- | -- |
| 85.85 | 0.432 | 11.9 | -- | 1.53 | -0.403 | -- | -- | -0.532 | 20 | 31.45 | 3230 | -- | -- |
| 213.86 | 0.683 | 11.9 | -0.526 | -- | -- | -- | -- | -0.685 | -- | -- | -- | -- | -- |
| 91.22 | 0.447 | 11.9 | -- | 1.54 | -- | -- | -- | -0.609 | 20.1 | -- | -- | -- | -- |
| 162.06 | 0.593 | 11.9 | -- | -- | -1.02 | -- | -- | -0.597 | -- | 28.3 | 721 | -- | -- |
| 221.15 | 0.694 | 11.8 | -- | -- | -- | -- | -- | -0.627 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.34 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 2 | 64.36 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 5 | 65.04 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 7 | 65.40 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 9 | 65.55 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 17 | 65.73 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 20 | 65.87 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 22 | 65.92 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 26 | 66.05 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 28 | 66.08 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 36 | 66.24 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 40 | 66.27 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 41 | 66.28 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 50 | 66.36 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 70 | 66.54 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 77 | 66.60 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 79 | 66.61 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 97 | 66.73 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 12 | 10 |
| 106 | 66.81 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 16 |
| 117 | 66.86 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 120 | 66.86 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 9 |
| 127 | 66.88 | temperature | 20.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 135 | 66.91 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 137 | 66.91 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 143 | 66.93 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 184 | 67.10 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 192 | 67.14 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 203 | 67.17 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 210 | 67.19 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 211 | 67.19 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 240 | 67.29 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 249 | 67.31 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 250 | 67.32 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 255 | 67.34 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 271 | 67.40 | temperature | 20.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 292 | 67.46 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 296 | 67.49 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 323 | 67.57 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 324 | 67.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 325 | 67.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 375 | 67.67 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 411 | 67.74 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 413 | 67.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 415 | 67.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 421 | 67.76 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 440 | 67.80 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 441 | 67.80 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 479 | 67.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 500 | 67.89 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 506 | 67.90 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 512 | 67.91 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 11 |
| 519 | 67.92 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 525 | 67.93 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 547 | 67.95 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 635 | 68.07 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 664 | 68.11 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 17 |
| 691 | 68.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 695 | 68.18 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 702 | 68.18 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 9 | 9 |
| 728 | 68.21 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 735 | 68.22 | humidity | 90.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 737 | 68.22 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 763 | 68.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 768 | 68.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 782 | 68.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 786 | 68.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 12 |
| 854 | 68.38 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 921 | 68.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 925 | 68.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 12 |
| 963 | 68.49 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 20 |