Os08g0244100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : t-snare domain containing protein.
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Os08g0244100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : t-snare domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.66 | 0.214 | 9.4 | -0.857 | 0.796 | -2.45 | 0.225 | 12.7 | 0.0115 | 7.11 | 1000 | 283 | -- | -- |
| 22.68 | 0.223 | 9.25 | -0.0735 | 0.797 | -0.186 | 0.23 | -- | 0.0114 | 7.04 | 1000 | 283 | -- | -- |
| 20.8 | 0.212 | 9.4 | -0.853 | 0.797 | -2.45 | -- | 12.7 | 0.011 | 7.11 | 1000 | 283 | -- | -- |
| 22.11 | 0.219 | 9.25 | -0.0565 | 0.8 | -0.458 | -- | -- | 0.0113 | 7.07 | 996.5 | 363 | -- | -- |
| 53.85 | 0.342 | 9.4 | -0.702 | -- | -2.48 | -- | 12.9 | 0.0116 | -- | 999 | 311 | -- | -- |
| 23.62 | 0.228 | 9.26 | -0.0402 | 0.795 | -- | 0.228 | -- | -0.000902 | 7.06 | -- | -- | -- | -- |
| 23.76 | 0.228 | 9.26 | -0.0358 | 0.796 | -- | -- | -- | -0.00143 | 7.06 | -- | -- | -- | -- |
| 54.73 | 0.345 | 9.27 | -0.0429 | -- | -0.66 | -- | -- | 0.0246 | -- | 997 | 1125 | -- | -- |
| 22.13 | 0.219 | 9.26 | -- | 0.796 | -0.523 | -- | -- | 0.0135 | 7.11 | 996.3 | 804 | -- | -- |
| 57.14 | 0.353 | 9.28 | -0.0201 | -- | -- | -- | -- | 0.013 | -- | -- | -- | -- | -- |
| 23.79 | 0.228 | 9.26 | -- | 0.796 | -- | -- | -- | 0.00256 | 7.06 | -- | -- | -- | -- |
| 54.77 | 0.345 | 9.27 | -- | -- | -0.723 | -- | -- | 0.0287 | -- | 996.5 | 1190 | -- | -- |
| 57.15 | 0.353 | 9.27 | -- | -- | -- | -- | -- | 0.0152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.38 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 11 | 20 |
| 29 | 20.68 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 34 | 20.70 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |
| 37 | 20.70 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 23 | 23 |
| 40 | 20.72 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 19 | 23 |
| 45 | 20.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 49 | 20.75 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 66 | 20.81 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 76 | 20.83 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 88 | 20.86 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 94 | 20.87 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 104 | 20.89 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 109 | 20.89 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 115 | 20.91 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 161 | 20.97 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 180 | 20.99 | atmosphere | 1000 | 270 | < th | dose dependent | no | NA | NA |
| 181 | 20.99 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 200 | 21.01 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 223 | 21.03 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 225 | 21.03 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 248 | 21.05 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 251 | 21.05 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 267 | 21.05 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 268 | 21.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 269 | 21.06 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 272 | 21.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 285 | 21.07 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 291 | 21.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 300 | 21.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 301 | 21.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 317 | 21.09 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 355 | 21.10 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 376 | 21.11 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 389 | 21.11 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 426 | 21.13 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 428 | 21.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 431 | 21.14 | atmosphere | 1000 | 270 | < th | dose independent | sin | 16 | NA |
| 487 | 21.16 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 502 | 21.17 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 519 | 21.18 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 552 | 21.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 591 | 21.21 | atmosphere | 1000 | 1440 | < th | dose dependent | sin | 9 | NA |
| 631 | 21.23 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 642 | 21.23 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 664 | 21.24 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 665 | 21.24 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 676 | 21.24 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 19 |
| 757 | 21.27 | atmosphere | 1000 | 270 | > th | dose independent | sin | 19 | NA |
| 806 | 21.28 | atmosphere | 1000 | 270 | < th | dose dependent | sin | 11 | NA |
| 810 | 21.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 811 | 21.28 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 837 | 21.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 918 | 21.31 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 989 | 21.32 | temperature | 15 | 4320 | > th | dose dependent | sin | 16 | NA |
| 996 | 21.32 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 8 |