Os08g0235400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os08g0235400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.55 | 0.416 | 8.26 | -0.338 | 0.499 | -0.786 | 0.289 | 0.361 | 0.286 | 19.7 | 22.5 | 2117 | -- | -- |
| 77.65 | 0.41 | 8.22 | -0.148 | 0.528 | -0.729 | 0.486 | -- | 0.377 | 19.2 | 22.1 | 1037 | -- | -- |
| 78.78 | 0.413 | 8.26 | -0.334 | 0.498 | -0.786 | -- | 0.326 | 0.288 | 19.8 | 22.5 | 2123 | -- | -- |
| 77.65 | 0.41 | 8.23 | -0.142 | 0.513 | -0.726 | -- | -- | 0.386 | 19.2 | 22.2 | 1038 | -- | -- |
| 92.13 | 0.447 | 8.25 | -0.348 | -- | -0.824 | -- | 0.335 | 0.267 | -- | 22.4 | 2142 | -- | -- |
| 102.37 | 0.474 | 8.18 | 0.0981 | 0.543 | -- | 0.237 | -- | 0.605 | 20.1 | -- | -- | -- | -- |
| 102.54 | 0.474 | 8.18 | 0.0911 | 0.542 | -- | -- | -- | 0.605 | 20.1 | -- | -- | -- | -- |
| 87.41 | 0.435 | 8.23 | -0.206 | -- | -0.847 | -- | -- | 0.332 | -- | 21.9 | 794 | -- | -- |
| 78.16 | 0.412 | 8.23 | -- | 0.481 | -0.741 | -- | -- | 0.379 | 19.4 | 22.2 | 1037 | -- | -- |
| 118.68 | 0.509 | 8.17 | 0.0866 | -- | -- | -- | -- | 0.599 | -- | -- | -- | -- | -- |
| 102.76 | 0.474 | 8.19 | -- | 0.541 | -- | -- | -- | 0.595 | 20.2 | -- | -- | -- | -- |
| 88.42 | 0.438 | 8.22 | -- | -- | -0.803 | -- | -- | 0.36 | -- | 22.02 | 780 | -- | -- |
| 118.88 | 0.509 | 8.17 | -- | -- | -- | -- | -- | 0.589 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 12 | 76.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 13 | 76.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 31 | 77.63 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 72 | 79.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 79 | 79.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 83 | 79.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 87 | 79.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 89 | 79.69 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 95 | 79.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 96 | 79.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 99 | 79.76 | temperature | 10 | 30 | > th | dose dependent | sin | 5 | NA |
| 108 | 79.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 141 | 79.95 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 155 | 79.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 171 | 80.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 212 | 80.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 364 | 80.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 485 | 81.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 528 | 81.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 570 | 81.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 588 | 81.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 636 | 81.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 663 | 81.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 682 | 81.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 726 | 81.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 775 | 81.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 776 | 81.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 791 | 81.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 847 | 81.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 867 | 81.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 881 | 81.87 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 902 | 81.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |