BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0235400 Os08g0235400|Os08g0235400
(365 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G42340.1 | chr5:16928086-16930367 REVERSE LENGTH=661 54 1e-07
AT3G54790.1 | chr3:20281830-20284363 REVERSE LENGTH=761 53 2e-07
AT4G21350.1 | chr4:11356143-11357267 REVERSE LENGTH=375 53 2e-07
AT3G46510.1 | chr3:17124106-17126539 REVERSE LENGTH=661 52 4e-07
AT1G10560.1 | chr1:3484613-3486706 FORWARD LENGTH=698 52 5e-07
AT1G67530.1 | chr1:25308229-25311081 FORWARD LENGTH=783 52 7e-07
AT1G27910.1 | chr1:9720962-9723975 REVERSE LENGTH=769 51 8e-07
AT1G29340.1 | chr1:10264412-10266601 FORWARD LENGTH=730 51 1e-06
AT1G49780.1 | chr1:18429024-18430289 REVERSE LENGTH=422 50 1e-06
AT3G52450.1 | chr3:19440943-19442250 REVERSE LENGTH=436 50 2e-06
AT5G18320.1 | chr5:6064431-6066186 REVERSE LENGTH=459 50 2e-06
AT1G24330.1 | chr1:8631779-8634835 FORWARD LENGTH=772 50 2e-06
AT1G71020.1 | chr1:26790825-26793105 REVERSE LENGTH=629 50 2e-06
AT3G19380.1 | chr3:6714602-6715867 REVERSE LENGTH=422 49 6e-06
>AT5G42340.1 | chr5:16928086-16930367 REVERSE LENGTH=661
Length = 660
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 272 KAKGKLEGFEIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPV 330
KA K +P +CP+ +M+DPV+IATG+T ++ ++ WFD CP T Q +
Sbjct: 280 KAITKSTSLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQEL 338
>AT3G54790.1 | chr3:20281830-20284363 REVERSE LENGTH=761
Length = 760
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 278 EGFEIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPVS 331
+G IP CPL +M+DPV++A+G+T DR ++ W D +CP T Q ++
Sbjct: 234 KGISIPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLT 287
>AT4G21350.1 | chr4:11356143-11357267 REVERSE LENGTH=375
Length = 374
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 279 GFEIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPVSST 333
F++P + CP+ +M DPV++ +G T DR ++ W D CP+T P+S T
Sbjct: 2 AFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSET 56
>AT3G46510.1 | chr3:17124106-17126539 REVERSE LENGTH=661
Length = 660
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 282 IPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPVSSTVL 335
IP + CP+ +M DPV++++G+T +R C+ W + CP T Q ++ST L
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTL 309
>AT1G10560.1 | chr1:3484613-3486706 FORWARD LENGTH=698
Length = 697
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 284 QNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPVSSTVL 335
++L+CP+ +M DPV+I TG T DR + WF CP+T + ++ST L
Sbjct: 290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTEL 341
>AT1G67530.1 | chr1:25308229-25311081 FORWARD LENGTH=783
Length = 782
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 283 PQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPVSSTVLR-NERIR 341
P+ L CP+ +M DPV+IA+G+T +R C+ WF + CP T Q + L N ++
Sbjct: 273 PEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTPNNCVK 332
Query: 342 GYV 344
G +
Sbjct: 333 GLI 335
>AT1G27910.1 | chr1:9720962-9723975 REVERSE LENGTH=769
Length = 768
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 283 PQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPVSSTVL 335
P+ L CP+ +M DPV+IA+G+T +R C+ WF + CP T Q +S L
Sbjct: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCL 332
>AT1G29340.1 | chr1:10264412-10266601 FORWARD LENGTH=730
Length = 729
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 282 IPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQ 328
+P++ VCP+ ++M DPV+I+TG+T DR+ + W ++ CP T Q
Sbjct: 305 VPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQ 351
>AT1G49780.1 | chr1:18429024-18430289 REVERSE LENGTH=422
Length = 421
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 275 GKLE----GFEIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPV 330
G LE G +IP + CP+ ++M DPV I+TG+T DR + +W CPVT +
Sbjct: 3 GNLEPLDLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVAL 62
Query: 331 SS-TVLRNERIRGYV 344
S T++ N +R +
Sbjct: 63 SDFTLIPNHTLRRLI 77
>AT3G52450.1 | chr3:19440943-19442250 REVERSE LENGTH=436
Length = 435
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 280 FEIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAW-FDKHGHICPVTCQPVSSTVL 335
EIP +CP+ ++M DPV+++TG T DR + W F + CPVT Q ++ T L
Sbjct: 5 IEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDL 61
>AT5G18320.1 | chr5:6064431-6066186 REVERSE LENGTH=459
Length = 458
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 281 EIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPVS 331
E+P+ +C L +M++PV+IA+G+T ++ + W KH CP T Q +S
Sbjct: 71 EVPKEFICTLSNTIMIEPVIIASGQTYEKRYITEWL-KHERTCPKTKQVLS 120
>AT1G24330.1 | chr1:8631779-8634835 FORWARD LENGTH=772
Length = 771
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 283 PQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQ 328
P+ L CP+ +M DPV+IA+G+T +R C+ WF + CP T Q
Sbjct: 276 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQ 321
>AT1G71020.1 | chr1:26790825-26793105 REVERSE LENGTH=629
Length = 628
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 268 TEDRKAKGKLEGFEIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTC 327
TE+ K + IP++ +CP+ +M DP +++TG+T +R ++ W D CP T
Sbjct: 229 TENSDDSQKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQ 288
Query: 328 QPVSSTVL 335
Q + + L
Sbjct: 289 QKLENFTL 296
>AT3G19380.1 | chr3:6714602-6715867 REVERSE LENGTH=422
Length = 421
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 279 GFEIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFD-KHGHICPVTCQPVSS-TVLR 336
G +IP + CP+ +M DPV + TG+T DR + +W + CPVT P+S T++
Sbjct: 11 GIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIP 70
Query: 337 NERIRGYV 344
N +R +
Sbjct: 71 NHTLRRLI 78
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,655,911
Number of extensions: 258521
Number of successful extensions: 656
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 14
Length of query: 365
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,364,969
Effective search space: 2216716785
Effective search space used: 2216716785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)