Os08g0233400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os08g0233400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.82 | 0.503 | 9.44 | 2.03 | 0.855 | -2.8 | 1.29 | 0.423 | 1.25 | 5.4 | 19.56 | 4991 | -- | -- |
| 111.54 | 0.492 | 9.41 | 2.01 | 0.817 | -2.77 | 1.56 | -- | 1.26 | 5.33 | 19.46 | 5861 | -- | -- |
| 115.89 | 0.501 | 9.45 | 1.95 | 0.858 | -2.77 | -- | 0.201 | 1.22 | 5.13 | 19.4 | 5910 | -- | -- |
| 115.73 | 0.501 | 9.43 | 1.95 | 0.846 | -2.83 | -- | -- | 1.23 | 5.27 | 19.5 | 5910 | -- | -- |
| 151.77 | 0.574 | 9.44 | 1.99 | -- | -2.85 | -- | -0.12 | 1.25 | -- | 19.4 | 5734 | -- | -- |
| 239.52 | 0.726 | 9.26 | 3.87 | 0.86 | -- | 1.27 | -- | 2 | 5.12 | -- | -- | -- | -- |
| 243.54 | 0.731 | 9.26 | 3.87 | 0.87 | -- | -- | -- | 1.99 | 5.25 | -- | -- | -- | -- |
| 151.79 | 0.574 | 9.45 | 1.97 | -- | -2.84 | -- | -- | 1.24 | -- | 19.45 | 5744 | -- | -- |
| 105.16 | 0.478 | 9.53 | -- | 0.841 | -3.9 | -- | -- | 0.781 | 5.45 | 17.11 | 47520 | -- | -- |
| 283.06 | 0.786 | 9.27 | 3.9 | -- | -- | -- | -- | 2.01 | -- | -- | -- | -- | -- |
| 638.07 | 1.18 | 9.36 | -- | 0.937 | -- | -- | -- | 1.56 | 5.1 | -- | -- | -- | -- |
| 141.95 | 0.555 | 9.55 | -- | -- | -3.93 | -- | -- | 0.792 | -- | 17.2 | 47520 | -- | -- |
| 684.11 | 1.22 | 9.37 | -- | -- | -- | -- | -- | 1.58 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.47 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 3 | 97.50 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 10 | 97.57 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 19 | 97.76 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 20 | 97.77 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 23 | 97.79 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 29 | 97.83 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 16 | NA |
| 33 | 97.85 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 36 | 97.87 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 80 | 98.14 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 111 | 98.29 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 16 | NA |
| 147 | 98.46 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 186 | 98.60 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 371 | 99.02 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 1 | NA |
| 384 | 99.05 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 399 | 99.08 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 402 | 99.09 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 525 | 99.40 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 532 | 99.43 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 567 | 99.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 577 | 99.53 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 629 | 99.61 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 648 | 99.65 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 735 | 99.87 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 856 | 100.22 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 870 | 100.26 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 872 | 100.26 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 881 | 100.28 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 888 | 100.30 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 915 | 100.33 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 11 | NA |