BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0233400 Os08g0233400|J075025I12
         (168 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04710.1  | chr3:1278229-1280942 FORWARD LENGTH=457             71   3e-13

>AT3G04710.1 | chr3:1278229-1280942 FORWARD LENGTH=457
          Length = 456

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 23  HELLEAAASGDLRHLKRLVRALDKVRGRLQEVVEAARTDGGIWALQLAAGNEQLEVCRYL 82
            ++L AA +G+L  LK + + LD+ +  L + VE+ +      AL  AA   Q E+CRYL
Sbjct: 16  QQILNAACTGNLEFLKNVAKQLDEGKD-LTKTVESIKDANKRGALHFAAREGQTEICRYL 74

Query: 83  VEGLRVDVNAADDEGRTPLVFAVIGENAAIVKYLLXXXXXXXXXXXXXLTPLHSAAGIGP 142
           +E L+++ +A D+ G TPLV A        VKYLL              T LH AAG G 
Sbjct: 75  LEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIASELGATALHHAAGTGE 134

Query: 143 LYSYASLFYTRAP 155
           +     L     P
Sbjct: 135 IELLKELLSRGVP 147



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,615,441
Number of extensions: 83054
Number of successful extensions: 345
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)