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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0228200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0372) R2 : 0.000679
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0436 (0.0783) R2dN8 : 0.000877 R2N8 : 0.000679
σ : 0.701
deviance : 225.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.45 0.68 2.86 0.0097 0.351 -0.455 0.382 0.74 0.151 14.9 90 34 -- --
211.85 0.678 2.85 -0.0905 0.383 -0.459 0.793 -- 0.135 14.4 89 29 -- --
209.76 0.675 2.86 0.0337 0.34 -0.444 -- 0.899 0.152 15.1 89.81 33 -- --
214.63 0.682 2.85 -0.0453 0.359 -0.43 -- -- 0.14 14.9 89.96 33 -- --
214.02 0.681 2.87 0.0547 -- -0.282 -- 0.949 0.112 -- 89.15 33 -- --
223.63 0.701 2.87 0.00899 0.0456 -- 0.619 -- 0.0441 13.7 -- -- -- --
225.15 0.703 2.87 0.029 0.0463 -- -- -- 0.0477 14 -- -- -- --
219.49 0.69 2.86 -0.0225 -- -0.257 -- -- 0.0975 -- 89.87 33 -- --
214.67 0.682 2.85 -- 0.36 -0.427 -- -- 0.145 14.9 89.78 33 -- --
225.28 0.701 2.87 0.027 -- -- -- -- 0.0466 -- -- -- -- --
225.17 0.702 2.87 -- 0.0457 -- -- -- 0.0445 14 -- -- -- --
219.5 0.69 2.86 -- -- -0.255 -- -- 0.0997 -- 89.76 33 -- --
225.29 0.701 2.87 -- -- -- -- -- 0.0436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.54 radiation 1.0 43200 < th dose dependent rect. 3 1
2 194.21 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 194.23 temperature 20.0 30 > th dose dependent rect. 2 1
4 194.25 wind 3.0 30 < th dose dependent rect. 2 1
5 194.30 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 194.34 temperature 20.0 30 > th dose independent rect. 2 1
11 194.37 wind 1.0 30 < th dose independent rect. 2 1
16 194.42 humidity 80.0 30 > th dose independent rect. 2 1
20 194.44 humidity 80.0 30 > th dose dependent rect. 2 1
22 194.45 humidity 60.0 30 > th dose dependent rect. 2 1
28 194.47 temperature 10.0 30 > th dose independent rect. 2 1
30 194.47 temperature 30.0 30 < th dose independent rect. 2 1
31 194.47 humidity 50.0 30 > th dose independent rect. 2 1
35 194.47 atmosphere 1010.0 30 < th dose independent rect. 2 1
37 194.47 radiation 1.0 30 < th dose independent rect. 2 1
42 194.47 precipitation 0.1 30 < th dose independent rect. 2 1
43 194.47 temperature 10.0 30 > th dose independent rect. 3 23
45 194.47 radiation 1.0 30 < th dose dependent rect. 2 1
50 194.47 precipitation 0.1 30 < th dose dependent rect. 2 1
57 194.69 atmosphere 1015.0 30 < th dose dependent rect. 2 1
61 194.80 temperature 30.0 30 < th dose dependent rect. 2 1
68 194.95 atmosphere 995.0 30 > th dose independent rect. 3 23
71 194.99 precipitation 0.1 30 < th dose independent rect. 3 23
72 194.99 precipitation 0.1 30 < th dose dependent rect. 3 23
74 195.02 wind 1.0 30 > th dose independent rect. 2 1
83 195.14 wind 9.0 1440 < th dose independent rect. 3 1
84 195.14 temperature 10.0 1440 > th dose independent rect. 3 1
87 195.14 temperature 30.0 1440 < th dose independent rect. 3 1
91 195.14 humidity 50.0 1440 > th dose independent rect. 3 1
100 195.14 atmosphere 995.0 1440 > th dose independent rect. 3 1
101 195.14 radiation 1.0 1440 < th dose independent rect. 3 1
121 195.14 temperature 10.0 1440 > th dose independent rect. 4 23
124 195.14 radiation 1.0 1440 < th dose dependent rect. 3 1
178 197.25 wind 9.0 30 < th dose independent rect. 3 23
184 198.47 radiation 1.0 90 < th dose independent rect. 7 3
200 200.72 temperature 10.0 30 > th dose dependent rect. 3 23
203 201.10 humidity 90.0 10 > th dose dependent rect. 7 7
209 201.40 radiation 1.0 90 < th dose dependent rect. 7 3
218 201.88 radiation 1.0 30 < th dose dependent rect. 7 1
223 201.92 humidity 90.0 30 > th dose dependent rect. 8 2
235 202.32 humidity 90.0 30 > th dose independent rect. 13 5
258 203.43 humidity 50.0 30 > th dose independent rect. 3 23
264 203.67 humidity 90.0 90 > th dose dependent rect. 6 15
273 204.11 humidity 90.0 90 > th dose dependent rect. 13 4
296 204.86 humidity 90.0 90 > th dose independent rect. 6 12
302 205.01 humidity 90.0 90 > th dose independent rect. 6 16
329 205.84 wind 7.0 90 > th dose independent rect. 7 2
333 206.00 humidity 90.0 10 > th dose independent rect. 7 20
340 206.19 humidity 80.0 30 > th dose dependent rect. 7 20
342 206.29 wind 7.0 90 > th dose dependent rect. 7 2
348 206.31 wind 7.0 90 > th dose dependent rect. 1 8
363 206.56 atmosphere 1015.0 30 < th dose independent rect. 3 23
369 206.72 radiation 10.0 270 < th dose dependent rect. 12 3
371 206.76 radiation 10.0 270 < th dose dependent rect. 13 1
384 207.34 humidity 90.0 30 > th dose independent rect. 8 2
396 207.53 humidity 90.0 10 > th dose independent rect. 7 7
404 207.57 radiation 10.0 90 < th dose dependent rect. 12 5
417 207.68 temperature 20.0 30 < th dose independent rect. 7 1
420 207.68 temperature 20.0 30 < th dose dependent rect. 7 1
458 207.99 temperature 30.0 30 < th dose independent rect. 3 23
495 208.11 wind 3.0 90 < th dose independent rect. 16 1
551 208.67 wind 1.0 30 < th dose independent rect. 15 12
557 208.70 humidity 90.0 30 < th dose independent rect. 10 23
570 208.85 radiation 30.0 90 < th dose dependent rect. 12 15
577 208.92 humidity 90.0 30 < th dose independent rect. 20 23
581 208.98 radiation 10.0 270 < th dose independent rect. 12 3
593 209.13 humidity 90.0 30 < th dose independent sin 22 NA
594 209.13 temperature 25.0 270 > th dose independent rect. 23 4
605 209.22 humidity 90.0 90 > th dose independent rect. 15 2
613 209.30 radiation 10.0 90 < th dose dependent rect. 6 21
629 209.47 humidity 90.0 10 > th dose independent rect. 2 21
640 209.52 humidity 90.0 30 < th dose independent rect. 3 23
641 209.54 humidity 90.0 30 < th dose independent no NA NA
655 209.72 wind 1.0 10 < th dose independent rect. 11 16
663 209.79 radiation 10.0 90 < th dose independent rect. 12 15
670 209.84 radiation 10.0 90 < th dose dependent rect. 7 10
675 209.89 temperature 25.0 10 < th dose independent rect. 2 21
705 210.09 radiation 10.0 4320 < th dose dependent rect. 12 2
707 210.11 wind 1.0 10 > th dose independent rect. 22 9
709 210.11 humidity 60.0 90 > th dose dependent rect. 13 14
727 210.29 humidity 90.0 30 < th dose independent rect. 6 23
731 210.35 temperature 25.0 10 < th dose independent rect. 6 21
738 210.38 temperature 25.0 270 > th dose dependent rect. 23 4
742 210.39 wind 5.0 10 < th dose dependent rect. 13 14
760 210.50 wind 3.0 90 < th dose dependent rect. 16 1
786 210.67 wind 1.0 30 > th dose independent rect. 3 23
805 210.75 temperature 30.0 10 < th dose dependent rect. 7 12
836 210.93 temperature 25.0 10 < th dose independent rect. 2 17
841 210.97 humidity 90.0 90 > th dose independent sin 22 NA
843 210.98 humidity 90.0 30 < th dose independent rect. 23 23
851 211.04 humidity 90.0 30 < th dose independent rect. 8 23
852 211.05 temperature 30.0 30 < th dose dependent rect. 7 15
872 211.12 humidity 90.0 90 < th dose independent rect. 2 1
884 211.18 wind 1.0 10 > th dose independent rect. 8 23
906 211.27 temperature 25.0 10 < th dose independent rect. 24 23
908 211.28 temperature 25.0 10 < th dose independent rect. 12 23
933 211.36 humidity 90.0 10 < th dose independent rect. 18 23
936 211.37 temperature 25.0 10 < th dose independent rect. 20 23
940 211.39 temperature 25.0 10 < th dose independent rect. 6 13
943 211.42 temperature 25.0 10 > th dose independent rect. 14 23
949 211.44 temperature 20.0 90 < th dose independent rect. 16 1
952 211.44 temperature 20.0 90 < th dose dependent rect. 16 1
956 211.45 humidity 90.0 10 > th dose independent rect. 2 12