Os08g0194400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, SWIM-type domain containing protein.
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Os08g0194400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, SWIM-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.42 | 0.343 | 8.21 | -0.614 | 0.864 | -0.771 | 0.493 | -1.59 | 0.544 | 23.1 | 84.06 | 7380 | -- | -- |
| 56.82 | 0.351 | 8.21 | -0.524 | 0.855 | -0.828 | 0.486 | -- | 0.579 | 23.1 | 85 | 7299 | -- | -- |
| 54.41 | 0.344 | 8.21 | -0.628 | 0.864 | -0.77 | -- | -1.53 | 0.55 | 22.9 | 85 | 7403 | -- | -- |
| 57.75 | 0.354 | 8.22 | -0.542 | 0.853 | -0.823 | -- | -- | 0.568 | 23 | 85.01 | 7315 | -- | -- |
| 94.51 | 0.455 | 8.24 | -0.424 | -- | -0.795 | -- | -0.798 | 0.399 | -- | 85 | 7364 | -- | -- |
| 66.31 | 0.382 | 8.25 | -0.442 | 0.865 | -- | 0.421 | -- | 0.427 | 23.1 | -- | -- | -- | -- |
| 67.05 | 0.383 | 8.25 | -0.459 | 0.863 | -- | -- | -- | 0.425 | 23 | -- | -- | -- | -- |
| 95.66 | 0.458 | 8.24 | -0.421 | -- | -0.815 | -- | -- | 0.398 | -- | 85.01 | 7315 | -- | -- |
| 64.91 | 0.375 | 8.22 | -- | 0.861 | -0.749 | -- | -- | 0.58 | 23 | 83.49 | 5812 | -- | -- |
| 113.44 | 0.498 | 8.23 | -0.439 | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
| 72.59 | 0.399 | 8.24 | -- | 0.859 | -- | -- | -- | 0.477 | 23 | -- | -- | -- | -- |
| 100.34 | 0.468 | 8.23 | -- | -- | -0.824 | -- | -- | 0.445 | -- | 85.01 | 7315 | -- | -- |
| 118.53 | 0.508 | 8.22 | -- | -- | -- | -- | -- | 0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 3 | 53.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 5 | 53.94 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 6 | 53.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 8 | 54.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 12 | 54.09 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 19 |
| 16 | 54.12 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 29 | 54.13 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 31 | 54.13 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 32 | 54.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 34 | 54.16 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 60 | 54.32 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 15 | NA |
| 71 | 54.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 73 | 54.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 79 | 54.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 84 | 54.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 102 | 54.50 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 116 | 54.59 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 117 | 54.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 119 | 54.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 121 | 54.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 126 | 54.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 128 | 54.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 129 | 54.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 161 | 54.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 20 |
| 164 | 54.70 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 173 | 54.71 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 206 | 54.88 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 242 | 54.96 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 248 | 54.97 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 249 | 54.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 260 | 55.00 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 265 | 55.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 268 | 55.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 15 |
| 276 | 55.03 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 279 | 55.03 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 281 | 55.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 296 | 55.08 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 19 | 22 |
| 300 | 55.09 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 315 | 55.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 357 | 55.17 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 358 | 55.17 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 361 | 55.17 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 366 | 55.18 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 394 | 55.21 | humidity | 60.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 404 | 55.24 | humidity | 60.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 405 | 55.24 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 614 | 55.36 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |
| 615 | 55.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 807 | 55.49 | humidity | 60.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 837 | 55.53 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 843 | 55.54 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 867 | 55.56 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 881 | 55.58 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 886 | 55.59 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 887 | 55.59 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 19 | 22 |
| 889 | 55.59 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 892 | 55.60 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 895 | 55.60 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 920 | 55.61 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 921 | 55.61 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 937 | 55.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 951 | 55.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 963 | 55.65 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 995 | 55.67 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 996 | 55.67 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 1000 | 55.68 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 3 |