BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0194400 Os08g0194400|AK073736
(421 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 101 6e-22
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 83 3e-16
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 74 2e-13
AT1G52520.1 | chr1:19565933-19568248 FORWARD LENGTH=704 60 2e-09
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 101/431 (23%), Positives = 178/431 (41%), Gaps = 35/431 (8%)
Query: 9 EVTKFTNHHTCTSSGRRKTTTPTSAWVASKAIHILGTDSGMGPKELQKRLQEDQKCKINY 68
E+TK+T HTC+ + +A + + I T + EL+K +E ++
Sbjct: 247 EITKYTGPHTCSHEYPNDFESEFAADEIERVVRIQPT---LSIAELKKWWKEKTGYELQT 303
Query: 69 DTVAKGRSLAMIQLHGSWEENFHMLYRWRAAVMERSPGSVI--EIDTVEVDGKVYFNRFF 126
+ G+ + ++ G +++F ++ + +A S G ++ + D F F
Sbjct: 304 SKMRDGKLEVIKRVFGDEDQSFRVMPKLISA-FHSSNGLLVDWQYDLFPNPDFASFRGVF 362
Query: 127 CAFSPCITGFLTGCRPYLSVDSTALNGLWKGHLASAIAIDGNNWMYPLAFGFFDAETTDN 186
+FS I GF CRP + VD+ +LNG ++ L A +D N +PLAF +TD+
Sbjct: 363 WSFSQSIEGF-QHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDS 421
Query: 187 WTWFMIQLLKAIGKVSPLAICTDACKGLEIAVHRV-----FPWAEHRECFNHLMQNLIKK 241
W WF ++ + + + L + + + + V+ PWA H+ C NHL +
Sbjct: 422 WRWFFTKIREKVTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGV 481
Query: 242 YGGSVFQEMYPAARSY-RAQVHEECMDTIKKACTDVALWLDTCHKLIW---YRSGFNAEI 297
+ + + A S + + + M+ IK+ + WLD + W + SG I
Sbjct: 482 FRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHDSGLRYGI 541
Query: 298 KCDYVTNNLAECFNNWIRDIKALPICELADTCREMIMTLWNRRRRIGNKFTGTILPANLH 357
A C + P C +A T M+M ++ R +K +I +
Sbjct: 542 IEIDREALFAVC--------RGFPYCTVAMTGGVMLM--FDELRSSFDKSLSSIYSSLNR 591
Query: 358 QLRARTRGLGHLSVVHAD-----ITTAE----VWDNSSSHARHVVRTHEQSCTCQEWQHT 408
+ + L D IT E SS +V+ + +CTC+++Q
Sbjct: 592 GVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQLNVSTCTCRKFQSY 651
Query: 409 GKPCRHALAVI 419
PC HALAV
Sbjct: 652 KFPCLHALAVF 662
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 150/397 (37%), Gaps = 76/397 (19%)
Query: 71 VAKGRSLAMIQLHGSWEENFHMLYRWRAAVMERSPGSVI--EIDTVEVDGK-VYFNRFFC 127
V + A+ + G W+++F ++ + +V+ S G ++ + D++ D + F F
Sbjct: 308 VEDAKVKAIKRFFGDWDQSFRLIPKL-MSVLHSSNGLLVDWQYDSLTHDPEHASFRGLFW 366
Query: 128 AFSPCITGFLTGCRPYLSVDSTALNGLWKGHLASAIAIDGNNWMYPLAFGFFDAETTDNW 187
AFS I GF CRP + VD+ L G +K L A A D N +PLAF + D+W
Sbjct: 367 AFSQSIQGF-QHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSW 425
Query: 188 TWFMIQLLKAIGKVSPLAICTDACKGLEIAVHRVF-----PWAEHRECFNHLMQNLIKKY 242
WF+ ++ + + + + + + + ++ PWA HR C HL L
Sbjct: 426 RWFLTRIREKVTQRQGICLISSPDPDILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVS 485
Query: 243 GGSVFQEMY---PAARSYRAQVHEECMDTIKKACTDVALWLDTCHKLIWYRSGFNAEIKC 299
G + + A S + + + M IK+ + WLD W
Sbjct: 486 PGFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQW----------- 534
Query: 300 DYVTNNLAECFNNWIRDIKALPICELADTCREMIMTLWNRRRRIGNKFTGTILPANLHQL 359
LA D + I + DT E + + R R++ +L L
Sbjct: 535 -----ALAH------DDGRRYGIMRI-DT--EALFAVCKRFRKVAMAGGVMLLFGQLKDA 580
Query: 360 RARTRGLGHLSVVHADITTAEVWD------------------------------------ 383
A + L S+ H D+ T V +
Sbjct: 581 FAESFKLSRGSLKHGDVYTEHVMEKLEEFETDSDTWVITITPLERDAYQVSMAPKKKTRL 640
Query: 384 --NSSSHARHVVRTHEQSCTCQEWQHTGKPCRHALAV 418
S+ +V+ ++ +CTC E+Q PC HALAV
Sbjct: 641 MGQSNDSTSGIVQLNDTTCTCGEFQKNKFPCLHALAV 677
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/434 (23%), Positives = 166/434 (38%), Gaps = 41/434 (9%)
Query: 9 EVTKFTNHHTCTSSGRRKTTTPTSAWVASKAIHILGTDSGMGPKELQKRLQEDQKCKINY 68
E+ K+T HTC + +A+ + T + EL+K ++ ++
Sbjct: 254 EIIKYTGPHTCHPIVPEDFKSEFETDEIERAVRYMPTQT---ISELKKWWKKKIGYELET 310
Query: 69 DTVAKGRSLAMIQLHGSWEENFHMLYRWRAAVMERSPGSVIE--IDTVEVDGKVYFNRFF 126
V + A+ ++ G W+++F + +A+ S G +++ D F F
Sbjct: 311 SDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCS-SNGLLVDWKYDLFPNPNFASFCGVF 369
Query: 127 CAFSPCITGFLTGCRPYLSVDSTALNGLWKGHLASAIAIDGNNWMYPLAFGFFDAETTDN 186
AF I GF CRP + VD+ LN ++ L A +D N +PLAF +TD
Sbjct: 370 WAFPQSIEGF-QHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDI 428
Query: 187 WTWFMIQLLKAIGKVSPLAICTDACKGLEIAVHRVF-----PWAEHRECFNHLMQNLIKK 241
W WF+ + + + + L + + + V+ PWA HR NH +
Sbjct: 429 WRWFLTGIREKVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYSQFSR- 487
Query: 242 YGGSVFQEMYPAARSYRA----QVHE--ECMDTIKKACTDVALWLDTCHKLIWYRSGFNA 295
VF AR RA Q E M+ IK+ + WLD + W + N
Sbjct: 488 ----VFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNG 543
Query: 296 E--------IKCDYVTNNLAECFNNWIRDIKALPICELADTCREMIMTLWNRRR---RIG 344
K + N E + + L L D R ++ R G
Sbjct: 544 RRYGIMEINTKALFAVCNAFEQAGHVVTGSVLL----LFDELRSKFDKSFSCSRSSLNCG 599
Query: 345 NKFTGTILPANLHQLRARTRGLGHLSVVHADITTAEVWDNSSSHARHVVRTHEQSCTCQE 404
+ +T ++ L + R ++ V D +V + +V+ + SCTC +
Sbjct: 600 DVYTEPVM-DKLEEFRTTFVTYSYI-VTPLDNNAFQV-ATALDKGECIVQLSDCSCTCGD 656
Query: 405 WQHTGKPCRHALAV 418
+Q PC HALAV
Sbjct: 657 FQRYKFPCLHALAV 670
>AT1G52520.1 | chr1:19565933-19568248 FORWARD LENGTH=704
Length = 703
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 146 VDSTALNGLWKGHLASAIAIDGNNWMYPLAFGFFDAETTDNWTWFMIQLLKAIGKVSPLA 205
+DS+ ++G ++ L + ++ + L+ GF ET +++ W ++++ ++ K SP
Sbjct: 300 IDSSYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHW-LLKVWLSVMKRSPQT 358
Query: 206 ICTDACKGLEIAVHRVFPWAEHRECFNHLMQNLIKKYGG 244
I TD CK LE A+ +VFP + R H+M+ + +K GG
Sbjct: 359 IVTDRCKPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGG 397
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.134 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,722,933
Number of extensions: 395020
Number of successful extensions: 1143
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1137
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 320
Effective length of database: 8,337,553
Effective search space: 2668016960
Effective search space used: 2668016960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)