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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0178500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.16 (0.0502) R2 : 0.433
β1 : -0.708 (0.184) R2dD : 0.0191 R2D : 0.0115
β2 : 2.55 (0.16) R2dC : 0.509 R2C : -0.157
β3 : -2.76 (0.165) R2dE : 0.558 R2E : -0.0922
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.275 (0.107) R2dN8 : 0.0107 R2N8 : 0.00378
σ : 0.94
deviance : 407.09
__
_____
C
peak time of C : 3.47
E
wheather : temperature
threshold : 1.983
memory length : 160
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.1
open length of G : 6.64

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
402.05 0.942 4.16 -0.727 2.45 -2.65 -0.609 -1.1 -0.292 3.59 2.251 148 20.3 6.37
402.68 0.935 4.16 -0.726 2.46 -2.67 -1.27 -- -0.289 3.54 1.41 158 20.1 6.47
400.73 0.932 4.15 -0.648 2.56 -2.65 -- -1.41 -0.241 3.52 -0.2308 163 20 6.67
407.09 0.94 4.16 -0.708 2.55 -2.76 -- -- -0.275 3.47 1.983 160 20.1 6.64
589.14 1.13 4.13 -0.663 -- -1.36 -- -1.42 -0.164 -- 1.139 51 20.2 6.7
539.64 1.09 4.13 -0.713 1.76 -- -0.278 -- -0.31 7 -- -- -- --
539.83 1.09 4.13 -0.718 1.76 -- -- -- -0.309 7.03 -- -- -- --
591 1.13 4.13 -0.638 -- -1.58 -- -- -0.0988 -- 12.37 41 20.3 6.57
419.87 0.954 4.15 -- 2.55 -2.77 -- -- -0.22 3.51 3.296 169 20 6.63
702.25 1.24 4.17 -0.683 -- -- -- -- -0.277 -- -- -- -- --
553.4 1.1 4.11 -- 1.75 -- -- -- -0.229 7.06 -- -- -- --
600.79 1.14 4.12 -- -- -1.64 -- -- -0.0267 -- 13.59 57 20 6.85
714.54 1.25 4.15 -- -- -- -- -- -0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 411.36 wind 9.0 90 < th dose independent rect. 3 17
2 411.43 temperature 10.0 270 > th dose dependent rect. 20 5
4 412.25 temperature 15.0 90 > th dose independent rect. 20 7
5 412.73 atmosphere 995.0 90 > th dose independent rect. 3 17
6 413.10 radiation 1.0 90 < th dose dependent rect. 20 7
8 413.11 temperature 30.0 90 < th dose independent rect. 20 7
9 413.11 humidity 50.0 90 > th dose independent rect. 20 7
12 413.11 atmosphere 995.0 90 > th dose independent rect. 20 7
13 413.11 radiation 1.0 90 < th dose independent rect. 20 7
18 413.11 temperature 10.0 90 > th dose independent rect. 3 17
19 413.11 atmosphere 1015.0 90 < th dose independent rect. 3 17
24 413.22 precipitation 0.1 90 < th dose independent rect. 20 7
25 413.22 precipitation 0.1 90 < th dose dependent rect. 20 7
26 413.24 temperature 10.0 90 > th dose dependent rect. 20 7
27 413.35 wind 9.0 90 < th dose independent rect. 20 7
30 415.63 temperature 15.0 270 > th dose independent rect. 20 5
52 417.04 radiation 10.0 90 < th dose dependent rect. 3 17
82 418.66 precipitation 0.1 270 < th dose independent rect. 2 18
83 418.66 precipitation 0.1 270 < th dose dependent rect. 2 18
84 418.72 wind 1.0 270 > th dose independent rect. 20 5
114 420.80 humidity 50.0 90 > th dose dependent rect. 20 7
120 421.98 atmosphere 995.0 270 > th dose independent rect. 1 19
144 423.04 temperature 15.0 270 > th dose independent rect. 6 9
145 423.05 wind 9.0 90 < th dose dependent rect. 3 17
150 423.68 radiation 30.0 4320 < th dose dependent rect. 21 7
155 424.13 temperature 15.0 270 > th dose independent rect. 20 19
159 424.35 temperature 10.0 1440 > th dose independent rect. 21 7
162 424.35 temperature 30.0 1440 < th dose independent rect. 21 7
166 424.35 humidity 50.0 1440 > th dose independent rect. 21 7
172 424.35 atmosphere 995.0 1440 > th dose independent rect. 21 7
173 424.35 radiation 1.0 1440 < th dose independent rect. 21 7
193 424.35 temperature 10.0 1440 > th dose independent rect. 4 17
202 424.49 atmosphere 1015.0 90 < th dose independent rect. 20 7
203 424.89 radiation 40.0 270 < th dose dependent rect. 15 4
212 425.76 radiation 30.0 270 < th dose independent rect. 14 6
222 427.06 atmosphere 1015.0 270 < th dose independent rect. 20 5
224 427.26 radiation 10.0 90 < th dose independent rect. 3 17
274 427.86 humidity 50.0 270 > th dose dependent rect. 20 5
295 428.25 wind 9.0 90 < th dose dependent rect. 20 7
303 428.56 wind 9.0 270 < th dose independent rect. 15 15
309 428.89 radiation 30.0 270 < th dose independent rect. 15 15
318 429.54 wind 9.0 270 < th dose dependent rect. 15 4
320 429.59 wind 9.0 270 < th dose independent rect. 15 5
329 430.27 radiation 40.0 270 < th dose dependent rect. 15 15
330 430.28 temperature 10.0 270 > th dose independent rect. 15 5
331 430.28 atmosphere 1015.0 270 < th dose independent rect. 15 5
333 430.32 precipitation 0.1 270 < th dose independent rect. 15 5
334 430.32 precipitation 0.1 270 < th dose dependent rect. 15 5
335 430.33 precipitation 0.1 270 < th dose independent rect. 6 9
336 430.33 precipitation 0.1 270 < th dose dependent rect. 6 9
337 430.41 humidity 50.0 90 > th dose dependent rect. 3 17
343 430.54 radiation 20.0 270 < th dose independent rect. 15 4
344 430.54 radiation 40.0 43200 < th dose dependent rect. 21 7
354 430.86 humidity 50.0 90 > th dose independent rect. 3 17
355 430.86 humidity 50.0 270 > th dose independent rect. 1 19
359 430.99 wind 1.0 270 > th dose independent rect. 15 5
365 431.13 atmosphere 1015.0 270 < th dose independent rect. 6 9
366 431.13 temperature 10.0 270 > th dose independent rect. 15 15
412 432.17 radiation 30.0 90 < th dose dependent rect. 17 16
415 432.25 wind 9.0 270 < th dose independent rect. 20 19
419 432.39 atmosphere 995.0 270 > th dose independent rect. 20 19
453 432.93 humidity 50.0 90 > th dose dependent rect. 17 3
459 433.24 precipitation 0.1 270 < th dose independent rect. 20 19
460 433.24 precipitation 0.1 270 < th dose dependent rect. 20 19
462 433.36 wind 9.0 270 < th dose independent rect. 6 9
488 434.08 wind 9.0 90 < th dose dependent rect. 17 3
502 434.63 atmosphere 995.0 270 > th dose independent rect. 6 9
513 434.83 precipitation 0.1 270 < th dose independent rect. 15 15
514 434.83 precipitation 0.1 270 < th dose dependent rect. 15 15
519 435.03 humidity 50.0 14400 > th dose independent rect. 18 3
531 435.23 atmosphere 995.0 90 > th dose dependent rect. 20 7
550 435.26 wind 9.0 270 < th dose dependent rect. 1 19
553 435.35 atmosphere 995.0 270 > th dose independent rect. 15 5
554 435.35 wind 1.0 270 > th dose independent rect. 1 19
558 435.44 radiation 30.0 90 < th dose dependent rect. 17 14
641 436.28 humidity 50.0 270 > th dose independent rect. 14 6
648 436.41 radiation 1.0 270 < th dose independent rect. 1 19
703 436.74 radiation 1.0 90 < th dose independent rect. 16 4
704 436.75 radiation 1.0 270 > th dose independent rect. 6 10
708 436.87 radiation 1.0 90 < th dose independent rect. 7 13
711 436.90 atmosphere 995.0 90 > th dose independent rect. 17 3
715 436.94 wind 7.0 90 < th dose independent rect. 17 3
768 437.52 radiation 1.0 90 < th dose independent rect. 10 10
802 437.64 humidity 50.0 270 > th dose independent rect. 15 4
817 437.83 humidity 50.0 90 > th dose independent rect. 17 3
828 438.08 wind 1.0 90 > th dose independent rect. 17 3
829 438.08 humidity 80.0 30 > th dose independent rect. 3 17
842 438.32 temperature 10.0 90 > th dose independent rect. 17 3
844 438.32 atmosphere 1010.0 90 < th dose independent rect. 17 3
868 438.67 wind 5.0 270 < th dose independent rect. 1 8
889 438.94 temperature 10.0 270 > th dose dependent rect. 1 8
932 439.50 radiation 1.0 90 < th dose independent sin 23 NA
961 439.67 temperature 15.0 270 > th dose independent rect. 9 16