BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0178500 Os08g0178500|AK107865
         (90 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10265.1  | chr4:6373226-6373477 REVERSE LENGTH=84              49   5e-07

>AT4G10265.1 | chr4:6373226-6373477 REVERSE LENGTH=84
          Length = 83

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 21 GAVEGLKDQSGLCRWNYALRSLHGAAMDTLMLQVHXXXXXXXXXXXXXXXXXXXXXXXRV 80
          GAVE LKDQ G+CRWNY +RS +    + L                             V
Sbjct: 15 GAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDYTNKTKQAEESLRTV 74

Query: 81 MYLSCCWGPS 90
          MYLS CWGPS
Sbjct: 75 MYLS-CWGPS 83



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.136    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 850,527
Number of extensions: 11797
Number of successful extensions: 31
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 90
Length of database: 11,106,569
Length adjustment: 61
Effective length of query: 29
Effective length of database: 9,434,193
Effective search space: 273591597
Effective search space used: 273591597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)