Os08g0177300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HSA domain containing protein.
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Os08g0177300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HSA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.86 | 0.204 | 10.4 | 0.618 | 0.45 | -0.0996 | -0.0595 | 2 | 0.137 | 6.97 | 19.37 | 1710 | -- | -- |
| 22.47 | 0.221 | 10.5 | 0.208 | 0.487 | -0.205 | -0.0281 | -- | 0.0631 | 6.71 | 12.88 | 14142 | -- | -- |
| 18.87 | 0.202 | 10.4 | 0.619 | 0.45 | -0.0992 | -- | 2.01 | 0.138 | 6.99 | 19.34 | 1719 | -- | -- |
| 22.33 | 0.22 | 10.5 | 0.174 | 0.452 | -0.164 | -- | -- | 0.0488 | 6.84 | 11.9 | 15333 | -- | -- |
| 29.31 | 0.252 | 10.4 | 0.635 | -- | -0.165 | -- | 1.94 | 0.166 | -- | 20.49 | 1842 | -- | -- |
| 22.6 | 0.223 | 10.5 | 0.0486 | 0.457 | -- | -0.108 | -- | -0.0222 | 6.93 | -- | -- | -- | -- |
| 22.63 | 0.223 | 10.5 | 0.0467 | 0.457 | -- | -- | -- | -0.0219 | 6.96 | -- | -- | -- | -- |
| 32.78 | 0.267 | 10.5 | -0.14 | -- | 0.182 | -- | -- | -0.0638 | -- | 33.1 | 47520 | -- | -- |
| 22.58 | 0.221 | 10.5 | -- | 0.459 | -0.0657 | -- | -- | -0.0115 | 6.92 | 10.91 | 10851 | -- | -- |
| 33.59 | 0.271 | 10.5 | 0.0561 | -- | -- | -- | -- | -0.0134 | -- | -- | -- | -- | -- |
| 22.69 | 0.223 | 10.5 | -- | 0.457 | -- | -- | -- | -0.0271 | 6.96 | -- | -- | -- | -- |
| 32.99 | 0.267 | 10.5 | -- | -- | 0.114 | -- | -- | -0.0405 | -- | 32.9 | 47520 | -- | -- |
| 33.68 | 0.271 | 10.5 | -- | -- | -- | -- | -- | -0.0196 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 2 | 18.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 4 | 18.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 5 | 18.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 10 | 18.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 22 | 18.55 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 37 | 18.59 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 43 | 18.61 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 108 | 18.74 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 116 | 18.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 122 | 18.76 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 130 | 18.77 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 143 | 18.78 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 155 | 18.79 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 230 | 18.84 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 234 | 18.84 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 251 | 18.85 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 266 | 18.86 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 23 | NA |
| 270 | 18.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 278 | 18.86 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 279 | 18.86 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 17 |
| 280 | 18.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 317 | 18.88 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 22 | NA |
| 334 | 18.88 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 367 | 18.89 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 388 | 18.90 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 450 | 18.91 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 517 | 18.93 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 518 | 18.93 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 542 | 18.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 553 | 18.94 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 576 | 18.94 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 20 |
| 606 | 18.95 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 611 | 18.95 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 624 | 18.95 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 18 |
| 794 | 18.98 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 811 | 18.99 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 838 | 18.99 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 867 | 19.00 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 897 | 19.00 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 898 | 19.00 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 902 | 19.00 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 904 | 19.00 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 966 | 19.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |