BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0177300 Os08g0177300|AK101719
(1259 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24870.1 | chr3:9075237-9084278 REVERSE LENGTH=1908 498 e-140
AT3G24880.1 | chr3:9086457-9095537 REVERSE LENGTH=1958 493 e-139
AT3G12810.1 | chr3:4065636-4073992 FORWARD LENGTH=2056 55 3e-07
>AT3G24870.1 | chr3:9075237-9084278 REVERSE LENGTH=1908
Length = 1907
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 303/707 (42%), Positives = 416/707 (58%), Gaps = 44/707 (6%)
Query: 527 TGENIPMMEKKECEDSTVAKKEHEDTILRRARLIEVNIKKAGERSLCNISLEKKPKSHWE 586
+G +I ++ + D+ + ED IL AR+I+ K+ E S +E + KS W+
Sbjct: 518 SGTDIEALKHQPSSDAVMLDTVKEDAILEEARIIQAKKKRIAELSCGTAPVEVREKSQWD 577
Query: 587 FVLEEMAWMANEFMQERLWKSAAASQMCHWIALSGRATFEEANIQRKQKSIARILAKSIM 646
FVLEEMAW+AN+F QERLWK AA+Q+CH +AL+ + FEE N RK K IA +L+ +I+
Sbjct: 578 FVLEEMAWLANDFAQERLWKMTAATQICHRVALTCQLRFEERNQHRKLKKIASVLSYAIL 637
Query: 647 KFWCSAETLRATSGEMRKEKQAEESIGIGETKLAGINAEKEQCNEP--LEQEK-LQSPIQ 703
+FW S E GE+ E S+GI KE C E L + L + ++
Sbjct: 638 QFWSSVEA--EVPGELE-----ETSLGI----------VKETCQESNCLNGIRCLAAGVK 680
Query: 704 SYALKFLK-DNCNISECLSLAEAPATPDRLNDFGILKVP--DQLSEANLFYGVAPGAMQA 760
YA +FLK +N +IS + A +TPD + D IL + DQL+EA+LFY V GAM+
Sbjct: 681 EYASRFLKYNNSSISYH---SAALSTPDNMCDPEILDISMVDQLTEASLFYSVPSGAMEV 737
Query: 761 YREFVEGPFVANKKTNNSRQKNDYEPSTTGSVAD-AHRGHAYEDDDVEASTYVLHGTYDD 819
Y + +E +K+ +S Q+ + + S + D + A+++D+ E STY L G ++
Sbjct: 738 YLKSIESHLTRCEKSGSSMQE-EVDTSAYDTAGDIGYNVTAFDEDEGETSTYYLPGAFES 796
Query: 820 GLP-XXXXXXXXXLMQQRMNGTRHYSTGVDMPYDPYVESKPGNQPFLSNGKRPSDFFN-- 876
LM + + R Y G D+PY V + G+ KRP N
Sbjct: 797 SRSFNISHKKRKNLM--KSHSARSYDLGDDLPY---VNNTGGSNSSSLIVKRPDSNINAG 851
Query: 877 -IPTKRIRTAARQRVVSPYPANASGATAFTSKTDASSGDTNSCQDDQSSLHGGSFPRKNV 935
+PT+R+RTA+R RVVSP+ +G SKTDASSGDT+S QD+ SSLHGGS +K
Sbjct: 852 SVPTRRVRTASRHRVVSPFGCATTGNLPVPSKTDASSGDTSSFQDEYSSLHGGSAVQKGT 911
Query: 936 DIESTVDFDRQL-YDGSEVSTXXXXXXXXXHPGYKTPQSVAESCSLIAGKKDYLKKRSEV 994
++ES+V+F++ L YD +E S H G Q+ + S+ +KD+ KKR E
Sbjct: 912 EVESSVNFEKLLPYDMAETS-GKPKKKKKTHQGSAYDQTWHLNPSVHVEQKDHWKKRPE- 969
Query: 995 HQFDSNGNIVINGQHAAKKPKLMNQAPDVSLEALTP-VGPMVSPAASQMSNMANPTKIIK 1053
+ FD NG + G H+AKK K Q + + + P G + SPAASQMSNM+NP K IK
Sbjct: 970 NNFDMNG---LYGPHSAKKQKTTKQLVENNFDMAIPHTGSIPSPAASQMSNMSNPNKSIK 1026
Query: 1054 IITNRDRGRKNKVLKMAASHSGPGSPWSSFEDQALVVLVHDMGQNWELVSDALNSIVQLK 1113
I RDRGRK K LK++ G G+PWS FEDQALVVLVHDMG NWEL+SDA+NS +++K
Sbjct: 1027 FIGGRDRGRKIKGLKISPGQHGSGNPWSLFEDQALVVLVHDMGPNWELISDAMNSTLKIK 1086
Query: 1114 CIYRRPNECKDRHKLLTEKXXXXXXXXXXXXXXXQHYQSTLPGIPKGSARHLFQRLQGPF 1173
IYR P ECKDRHK+L +K Q Y STLPGIPKGSAR LFQRLQGP
Sbjct: 1087 YIYRNPTECKDRHKILMDKTAGDGADSAEDSGNSQSYPSTLPGIPKGSARQLFQRLQGPM 1146
Query: 1174 EEETLKAHFEKIIFLGQKLHPNRRKGESQELKQINPLHSSHLHALSQ 1220
EE+TLK+HFEKI +G+KLH + + + ++ KQI P+H+S + ALSQ
Sbjct: 1147 EEDTLKSHFEKICLIGKKLHYRKTQNDGRDPKQIVPVHNSQVMALSQ 1193
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 107/192 (55%), Gaps = 7/192 (3%)
Query: 1 MGGIAECGVNIDQKASPRRAAIEKAQEELRQEYDVXXXXXXXXXXXXKGGNPLDFKLGHV 60
MGG+ + G I K SPRR AIEKAQ ELRQEYDV KGGNPLDFK G
Sbjct: 18 MGGVIDSGGGIGVKTSPRRTAIEKAQAELRQEYDVREERRRELEFLEKGGNPLDFKFGIA 77
Query: 61 ASLSVQSTSVADHITEQNVISEAKGSFAFAASPHGDXXXXXXXXXXXXCRDANTADNLML 120
S SVQSTS+ D E V SE K SFA ASPHGD + NTADNL+L
Sbjct: 78 TSHSVQSTSLTDQQAEHFVNSEVKDSFALTASPHGDSVESSGRPGVPTISEPNTADNLLL 137
Query: 121 LDGDTSNTGGEKLVKCGTKRTNVSQPDVSLRCDGQNNVKEAEDSSLFRPGAKNQAYARR- 179
D + + GE+ ++ ++ S+ + S + N KE EDS++FRP YARR
Sbjct: 138 FDSENKSVEGERNLRHPNRQNRTSESERSSKAHTNQNTKETEDSAIFRP------YARRN 191
Query: 180 RSKSSRENATAS 191
RSK SR+ A +S
Sbjct: 192 RSKISRDPARSS 203
>AT3G24880.1 | chr3:9086457-9095537 REVERSE LENGTH=1958
Length = 1957
Score = 493 bits (1269), Expect = e-139, Method: Compositional matrix adjust.
Identities = 296/680 (43%), Positives = 400/680 (58%), Gaps = 44/680 (6%)
Query: 527 TGENIPMMEKKECEDSTVAKKEHEDTILRRARLIEVNIKKAGERSLCNISLEKKPKSHWE 586
+G +I ++ + D+ + ED IL AR+I+ K+ E S +E + KS W+
Sbjct: 518 SGTDIEALKHQPSSDAVMLDTVKEDAILEEARIIQAKKKRIAELSCGTAPVEVREKSQWD 577
Query: 587 FVLEEMAWMANEFMQERLWKSAAASQMCHWIALSGRATFEEANIQRKQKSIARILAKSIM 646
FVLEEMAW+AN+F QERLWK AA+Q+CH +AL+ + FEE N RK K IA +L+ +I+
Sbjct: 578 FVLEEMAWLANDFAQERLWKMTAAAQICHRVALTCQLRFEERNQHRKLKKIASVLSNAIL 637
Query: 647 KFWCSAETLRATSGEMRKEKQAEESIGIGETKLAGINAEKEQCNEP--LEQEK-LQSPIQ 703
+FW S E GE+ E S+GI KE C E L + L + ++
Sbjct: 638 QFWSSVEA--EVPGELE-----ETSLGI----------VKETCQESNCLNGRRCLAAGVK 680
Query: 704 SYALKFLK-DNCNISECLSLAEAPATPDRLNDFGILKVP--DQLSEANLFYGVAPGAMQA 760
YA +FLK +N +IS + AP+TPD + D IL + DQL+EA+LFY V GAM+
Sbjct: 681 EYASRFLKYNNSSISYH---SAAPSTPDNMCDPEILDISMVDQLTEASLFYSVPSGAMEV 737
Query: 761 YREFVEGPFVANKKTNNSRQKNDYEPSTTGSVAD-AHRGHAYEDDDVEASTYVLHGTYDD 819
Y + +E +K+ +S Q+ + + S + D + A+++D+ E STY L G ++
Sbjct: 738 YLKSIESHLTRCEKSGSSMQE-EVDTSAYDTAGDIGYNVTAFDEDEGETSTYYLPGAFES 796
Query: 820 GLP-XXXXXXXXXLMQQRMNGTRHYSTGVDMPYDPYVESKPGNQPFLSNGKRPSDFFN-- 876
LM + + R Y G D+PY V + G+ KRP N
Sbjct: 797 SRSFNISHKKRKNLM--KSHSARSYDLGDDLPY---VNNTGGSNSSSLMAKRPDSNINAG 851
Query: 877 -IPTKRIRTAARQRVVSPYPANASGATAFTSKTDASSGDTNSCQDDQSSLHGGSFPRKNV 935
+PT+R+RTA+RQRVVSP+ +G SKTDASSGDT+S QD+ SSLHGGS +K
Sbjct: 852 SVPTRRVRTASRQRVVSPFGCATTGNLPVPSKTDASSGDTSSFQDEYSSLHGGSAVQKGT 911
Query: 936 DIESTVDFDRQL-YDGSEVSTXXXXXXXXXHPGYKTPQSVAESCSLIAGKKDYLKKRSEV 994
++ES+V+F++ L YD +E S H G Q+ S+ +KD+ KKR E
Sbjct: 912 EVESSVNFEKLLPYDMAETS-GRPKKKKKTHQGSAYDQTWHLDPSVHVEQKDHWKKRPE- 969
Query: 995 HQFDSNGNIVINGQHAAKKPKLMNQAPDVSLEALTP-VGPMVSPAASQMSNMANPTKIIK 1053
+ FD NG + G H+AKK K Q + + + P G + SPAASQMSNM+NP K IK
Sbjct: 970 NNFDMNG---LYGPHSAKKQKTTKQLVENNFDMAIPHTGSIPSPAASQMSNMSNPNKSIK 1026
Query: 1054 IITNRDRGRKNKVLKMAASHSGPGSPWSSFEDQALVVLVHDMGQNWELVSDALNSIVQLK 1113
I RDRGRK K LK++ G G+PWS FEDQALVVLVHDMG NWEL+SDA+NS +++K
Sbjct: 1027 FIGGRDRGRKIKGLKISPGQHGSGNPWSLFEDQALVVLVHDMGPNWELISDAMNSTLKIK 1086
Query: 1114 CIYRRPNECKDRHKLLTEKXXXXXXXXXXXXXXXQHYQSTLPGIPKGSARHLFQRLQGPF 1173
CIYR P ECKDRHK+L +K Q Y STLPGIPKGSAR LFQRLQGP
Sbjct: 1087 CIYRNPTECKDRHKILMDKTAGDGADSAEDSGNSQSYPSTLPGIPKGSARQLFQRLQGPM 1146
Query: 1174 EEETLKAHFEKIIFLGQKLH 1193
EE+TLK+HFEKI +G+KLH
Sbjct: 1147 EEDTLKSHFEKICLIGKKLH 1166
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 107/192 (55%), Gaps = 7/192 (3%)
Query: 1 MGGIAECGVNIDQKASPRRAAIEKAQEELRQEYDVXXXXXXXXXXXXKGGNPLDFKLGHV 60
MGG+ + G I K SPRR AIEKAQ ELRQEYDV KGGNPLDFK G
Sbjct: 18 MGGVIDSGGGIGVKTSPRRTAIEKAQAELRQEYDVREERRRELEFLEKGGNPLDFKFGIA 77
Query: 61 ASLSVQSTSVADHITEQNVISEAKGSFAFAASPHGDXXXXXXXXXXXXCRDANTADNLML 120
S SVQSTS+ D E V SE K SFA ASPHGD + NTADNL+L
Sbjct: 78 TSHSVQSTSLTDQQAEHFVNSEVKDSFALTASPHGDSVESSGRPGVPTISEPNTADNLLL 137
Query: 121 LDGDTSNTGGEKLVKCGTKRTNVSQPDVSLRCDGQNNVKEAEDSSLFRPGAKNQAYARR- 179
D + + GE+ ++ ++ S+ + S + N KE EDS++FRP YARR
Sbjct: 138 FDSENKSVEGERNLRHPNRQNRTSESERSSKAHTNQNTKETEDSAIFRP------YARRN 191
Query: 180 RSKSSRENATAS 191
RSK SR+ A +S
Sbjct: 192 RSKISRDPARSS 203
>AT3G12810.1 | chr3:4065636-4073992 FORWARD LENGTH=2056
Length = 2055
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 14/99 (14%)
Query: 579 KKPKSHWEFVLEEMAWMANEFMQERLWKSAAASQMCHWIAL-SGRATFEEAN-------- 629
++PK+HW+ VLEEMAW++ +F ER WK A A + +AL + + ++A+
Sbjct: 42 RRPKTHWDHVLEEMAWLSKDFESERKWKLAQAKK----VALRASKGMLDQASREERKLKE 97
Query: 630 IQRKQKSIARILAKSIMKFWCSAETLRATSGEM-RKEKQ 667
+++ + +A ++K + KFW E L ++ R EK+
Sbjct: 98 EEQRLRKVALNISKDMKKFWMKVEKLVLYKHQLVRNEKK 136
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 26,562,166
Number of extensions: 1135628
Number of successful extensions: 2728
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2722
Number of HSP's successfully gapped: 5
Length of query: 1259
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1149
Effective length of database: 8,090,809
Effective search space: 9296339541
Effective search space used: 9296339541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 118 (50.1 bits)