Os08g0174300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transferase family protein.
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Os08g0174300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.83 | 0.63 | 12 | 3.22 | 1.59 | -1.75 | 1.6 | 1.44 | 0.157 | 8.33 | 30 | 4270 | 16.1 | 16.8 |
| 182.91 | 0.63 | 12 | 3.2 | 1.67 | -1.78 | 1.99 | -- | 0.157 | 8.46 | 29.97 | 4259 | 16 | 16.8 |
| 184.75 | 0.633 | 12 | 3.25 | 1.65 | -1.79 | -- | 1.92 | 0.158 | 8.4 | 30 | 4253 | 16.1 | 16.8 |
| 193.86 | 0.648 | 12 | 3.21 | 1.65 | -1.85 | -- | -- | 0.156 | 8.46 | 29.97 | 4258 | 16 | 16.9 |
| 308.95 | 0.819 | 12 | 3.07 | -- | -1.52 | -- | 2.6 | 0.237 | -- | 29.01 | 4308 | 16.9 | 16.5 |
| 251.24 | 0.743 | 12.1 | 2.66 | 1.42 | -- | 1.76 | -- | -0.335 | 7.35 | -- | -- | -- | -- |
| 259.32 | 0.754 | 12.1 | 2.7 | 1.43 | -- | -- | -- | -0.34 | 7.14 | -- | -- | -- | -- |
| 311.79 | 0.822 | 12 | 3.06 | -- | -1.49 | -- | -- | 0.223 | -- | 29.97 | 4329 | 16.8 | 16.5 |
| 397.79 | 0.929 | 12.1 | -- | 1.79 | -1.81 | -- | -- | -0.332 | 8.44 | 30.06 | 5627 | 16.7 | 16.8 |
| 366.89 | 0.895 | 12.1 | 2.72 | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
| 451.12 | 0.994 | 12.2 | -- | 1.46 | -- | -- | -- | -0.64 | 7.02 | -- | -- | -- | -- |
| 503.48 | 1.05 | 12.2 | -- | -- | -1.53 | -- | -- | -0.436 | -- | 20.01 | 4313 | 18 | 17.1 |
| 562.69 | 1.11 | 12.2 | -- | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.63 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 2 | 193.76 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 4 | 194.82 | radiation | 20 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 6 | 194.87 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 7 | 194.89 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 10 | 194.93 | radiation | 30 | 4320 | > th | dose dependent | rect. | 16 | 17 |
| 12 | 195.01 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 65 | 196.37 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 71 | 197.02 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 17 |
| 72 | 197.07 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 87 | 197.10 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 101 | 197.84 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 146 | 200.57 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 149 | 200.75 | radiation | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 175 | 201.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 211 | 202.27 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 278 | 203.06 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 11 |
| 280 | 203.09 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 313 | 203.64 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 334 | 204.31 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 353 | 204.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 360 | 204.77 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 370 | 204.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 378 | 204.92 | radiation | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 380 | 204.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 387 | 205.00 | radiation | 1 | 1440 | > th | dose dependent | sin | 9 | NA |
| 469 | 205.54 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 472 | 205.60 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 499 | 206.02 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 504 | 206.03 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 699 | 206.66 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 723 | 206.76 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 868 | 207.36 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 903 | 207.44 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 904 | 207.45 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 973 | 207.66 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 9 |