BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0174300 Os08g0174300|Os08g0174300
         (469 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29590.1  | chr3:11398917-11400266 REVERSE LENGTH=450           51   1e-06

>AT3G29590.1 | chr3:11398917-11400266 REVERSE LENGTH=450
          Length = 449

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 113/307 (36%), Gaps = 46/307 (14%)

Query: 186 DGRSVWRFIEAWAACCRGXXXXXXXXXXXXXXXXXXXXDGEELARDVLRKYVP---NLPV 242
           DG++   F++AWA  C+                     D   L   +L +++    N P 
Sbjct: 166 DGKTTAMFLKAWAHNCK-QEQEALPHDLVPSLDRIIVQDPTGLETKLLNRWISASNNKPS 224

Query: 243 ATVPKFLVKGRLQLSRRTFTVAAAQMLRLKQRIVVAGAGGLTPPSGFVALAALAWVSFVR 302
             +    + G   + R T+ +    + +L++R+           S FV   A      V+
Sbjct: 225 LKLFPSKIIGS-DILRVTYRLTREDIKKLRERVETESHAKQLRLSTFVITYAYVITCMVK 283

Query: 303 SKHAAGAIAAGDE---VYLFFFIDCRGRRAAFDPPVGEGFFGTCISGCLATATXXXXXXX 359
            +        GD    V + F  D R R    +PP+   FFG CI G             
Sbjct: 284 MR-------GGDPTRFVCVGFASDFRSR---LNPPLPPTFFGNCIVGS----------GD 323

Query: 360 XXXXXXXXXXXXXXXXXXXXXDPLAGW---------EWMSLVGRIALSRL------VNMS 404
                                + L GW         E   L+   A  R+      ++++
Sbjct: 324 FDVKAEPILEEGEGKGFITAVETLTGWVNGLCPENIEKNMLLPFEAFKRMEPGRQMISVA 383

Query: 405 GSTRFPAYEAADFGWGSPSRTELVTMNHGGQVVLVAA--KGGGVQASVSMKPEHMDKFKS 462
           GSTR   Y  +DFGWG P + E+VT++    V L  +    GGV+  V +K + +++F S
Sbjct: 384 GSTRLGIY-GSDFGWGKPVKVEIVTIDKDASVSLSESGDGSGGVEVGVCLKKDDVERFGS 442

Query: 463 DFESYLE 469
            F   LE
Sbjct: 443 LFSIGLE 449



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,238,663
Number of extensions: 224038
Number of successful extensions: 521
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 367
Effective length of database: 8,310,137
Effective search space: 3049820279
Effective search space used: 3049820279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)