Os08g0167500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0167500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.51 | 0.237 | 11.9 | -0.493 | 0.651 | 0.265 | -0.633 | 1.25 | -0.389 | 21.2 | 1005 | 8 | -- | -- |
| 25.67 | 0.238 | 11.9 | -0.546 | 0.656 | 0.519 | -0.646 | -- | -0.388 | 21.2 | 1003 | 18 | -- | -- |
| 26.92 | 0.243 | 11.9 | -0.466 | 0.653 | 0.241 | -- | 1.38 | -0.39 | 21.1 | 1005 | 5 | -- | -- |
| 27.14 | 0.244 | 11.9 | -0.523 | 0.659 | 0.518 | -- | -- | -0.388 | 21.1 | 1003 | 10 | -- | -- |
| 51.19 | 0.333 | 11.8 | -0.443 | -- | 0.4 | -- | 0.675 | -0.338 | -- | 1010 | 83 | -- | -- |
| 29.14 | 0.253 | 11.9 | -0.492 | 0.655 | -- | -0.636 | -- | -0.416 | 21.1 | -- | -- | -- | -- |
| 30.56 | 0.259 | 11.9 | -0.47 | 0.658 | -- | -- | -- | -0.415 | 21.1 | -- | -- | -- | -- |
| 51.28 | 0.334 | 11.8 | -0.493 | -- | 0.503 | -- | -- | -0.317 | -- | 1010 | 114 | -- | -- |
| 34.18 | 0.274 | 11.9 | -- | 0.659 | 0.408 | -- | -- | -0.337 | 21.1 | 1003 | 12 | -- | -- |
| 55.51 | 0.348 | 11.9 | -0.468 | -- | -- | -- | -- | -0.419 | -- | -- | -- | -- | -- |
| 36.37 | 0.282 | 11.9 | -- | 0.658 | -- | -- | -- | -0.363 | 21 | -- | -- | -- | -- |
| 57.81 | 0.354 | 11.8 | -- | -- | 0.448 | -- | -- | -0.273 | -- | 1010 | 108 | -- | -- |
| 61.29 | 0.365 | 11.8 | -- | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.92 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 5 | 24.25 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 18 |
| 8 | 24.33 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 10 | 24.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 13 | 24.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 16 | 24.59 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 16 |
| 26 | 24.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 30 | 24.70 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 22 |
| 33 | 24.72 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 34 | 24.73 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 13 |
| 37 | 24.74 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 38 | 24.76 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 7 | 23 |
| 58 | 24.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 67 | 24.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 68 | 24.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 70 | 24.93 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 80 | 24.96 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 81 | 24.96 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 23 |
| 114 | 25.07 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 123 | 25.09 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 19 |
| 128 | 25.09 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 138 | 25.13 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 21 |
| 156 | 25.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 159 | 25.18 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 166 | 25.20 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 17 | 14 |
| 188 | 25.24 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 15 |
| 209 | 25.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 240 | 25.33 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 3 |
| 249 | 25.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 274 | 25.37 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 280 | 25.39 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 23 |
| 301 | 25.43 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 7 |
| 326 | 25.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 336 | 25.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 338 | 25.47 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 350 | 25.48 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 363 | 25.50 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 6 |
| 377 | 25.50 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 379 | 25.50 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 398 | 25.51 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 402 | 25.52 | atmosphere | 1005 | 10 | < th | dose dependent | no | NA | NA |
| 408 | 25.52 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 422 | 25.53 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 423 | 25.53 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 424 | 25.53 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 441 | 25.54 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 442 | 25.54 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 450 | 25.55 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 21 |
| 500 | 25.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 544 | 25.61 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 559 | 25.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 571 | 25.63 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 582 | 25.63 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 586 | 25.64 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 3 | 4 |
| 588 | 25.64 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |
| 624 | 25.67 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 648 | 25.68 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 676 | 25.70 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 679 | 25.70 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 688 | 25.71 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 2 |
| 692 | 25.71 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 13 |
| 712 | 25.72 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 4 |
| 800 | 25.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 825 | 25.77 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 13 | 23 |
| 845 | 25.78 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 18 |
| 847 | 25.78 | wind | 7 | 90 | < th | dose independent | rect. | 7 | 22 |
| 850 | 25.78 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 23 |
| 852 | 25.78 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 886 | 25.80 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 5 |
| 893 | 25.80 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 22 | 22 |
| 916 | 25.81 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 19 |
| 917 | 25.81 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 20 |
| 959 | 25.82 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 967 | 25.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 22 |