BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0167500 Os08g0167500|AK061061
         (253 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47910.1  | chr2:19614741-19615559 FORWARD LENGTH=247          271   3e-73

>AT2G47910.1 | chr2:19614741-19615559 FORWARD LENGTH=247
          Length = 246

 Score =  271 bits (693), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 158/208 (75%), Gaps = 2/208 (0%)

Query: 41  ARRAAEEGFRLRVAFNPSGNFDLSLSTDQDDAPQVEXXXXXTEGRFEIVINTDIIRTLDL 100
            R+   E   + VAFNPSGNFD+S   +  D+ +VE     T GR+E+VI+ D I  LDL
Sbjct: 36  VRKRRAEDVAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDL 95

Query: 101 SPVHEVLG--DLNSLTPAQTRNLLDRTVGFTINYEREDPYDVRELSEFPDIRLWFVRLDA 158
           SP    +G    +    A+ +  LDRT+GFTINY+REDP D RELSE+PD+RLWFVRLDA
Sbjct: 96  SPFQRAIGITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDA 155

Query: 159 CYPWFPVVLDWRAGELARYAAMLAPHQMSMRLGVVFNPEALELFVMKKVFIVYSWLKQQE 218
            YPW P++LDWRAGELARYAAML PHQMS+R+GVVFNPEALELFVM KVF+VY WLK+  
Sbjct: 156 MYPWLPLLLDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHG 215

Query: 219 HPKPGLKTADMARMLGFGIGDELFDLIE 246
            PKP LKT+DMARMLGFGIGDELFDLI+
Sbjct: 216 VPKPRLKTSDMARMLGFGIGDELFDLID 243



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,892,515
Number of extensions: 186405
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)