Os08g0166100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0166100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.15 | 0.432 | 992 | -6040 | 0.0408 | 456000 | 0.1 | -2790000 | 0.0172 | 8.11 | 0.9852 | 12 | 12 | 1.14 |
| 86.15 | 0.436 | 2.99 | -0.265 | 0.0409 | 4.69 | 0.101 | -- | 0.0172 | 8.1 | 0.9852 | 12 | 12 | 1.14 |
| 86.18 | 0.432 | 992 | -6040 | 0.0406 | 456000 | -- | -2790000 | 0.0173 | 8.45 | 0.9944 | 12 | 12 | 1.58 |
| 83.31 | 0.425 | 2.99 | -0.267 | 0.0384 | 4.73 | -- | -- | 0.0208 | 7.25 | 1.288 | 4 | 12 | 0.564 |
| 86.27 | 0.433 | 992 | -6040 | -- | 456000 | -- | -2790000 | 0.0177 | -- | 0.9956 | 13 | 12 | 1.57 |
| 107.99 | 0.487 | 2.99 | -0.242 | 0.0685 | -- | 0.147 | -- | 0.00698 | 10 | -- | -- | -- | -- |
| 108.07 | 0.487 | 2.99 | -0.236 | 0.0676 | -- | -- | -- | 0.00739 | 10.2 | -- | -- | -- | -- |
| 83.38 | 0.425 | 2.99 | -0.278 | -- | 4.76 | -- | -- | 0.0205 | -- | 1.278 | 6 | 12 | 0.861 |
| 85.38 | 0.43 | 2.99 | -- | 0.0327 | 4.69 | -- | -- | 0.038 | 7.87 | 1.397 | 3 | 11.9 | 0.947 |
| 108.35 | 0.486 | 2.99 | -0.237 | -- | -- | -- | -- | 0.00724 | -- | -- | -- | -- | -- |
| 109.54 | 0.49 | 2.99 | -- | 0.0689 | -- | -- | -- | 0.0337 | 10.5 | -- | -- | -- | -- |
| 85.41 | 0.43 | 2.98 | -- | -- | 4.7 | -- | -- | 0.0511 | -- | 1.368 | 3 | 11.9 | 1.1 |
| 109.83 | 0.489 | 2.99 | -- | -- | -- | -- | -- | 0.0335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.23 | wind | 1e+00 | 10 | < th | dose independent | rect. | 12 | 1 |
| 3 | 86.23 | wind | 1e+00 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 5 | 86.36 | atmosphere | 1e+03 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 24 | 88.66 | atmosphere | 1e+03 | 90 | < th | dose independent | rect. | 10 | 1 |
| 26 | 88.91 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 11 | 1 |
| 66 | 90.98 | temperature | 3e+01 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 142 | 95.65 | wind | 1e+00 | 10 | < th | dose independent | sin | 20 | NA |
| 155 | 96.54 | temperature | 3e+01 | 90 | > th | dose independent | rect. | 10 | 1 |
| 174 | 96.74 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 8 | 4 |
| 199 | 96.95 | wind | 1e+00 | 10 | > th | dose independent | sin | 20 | NA |
| 288 | 97.56 | temperature | 3e+01 | 270 | > th | dose independent | rect. | 8 | 1 |
| 308 | 97.81 | temperature | 3e+01 | 90 | > th | dose dependent | sin | 9 | NA |
| 332 | 98.15 | wind | 1e+00 | 10 | < th | dose dependent | sin | 20 | NA |
| 609 | 101.78 | humidity | 8e+01 | 30 | < th | dose independent | rect. | 1 | 3 |
| 613 | 101.78 | humidity | 8e+01 | 30 | < th | dose dependent | rect. | 1 | 3 |
| 615 | 101.79 | humidity | 8e+01 | 30 | < th | dose independent | rect. | 1 | 1 |
| 621 | 101.79 | humidity | 8e+01 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 660 | 102.08 | humidity | 7e+01 | 270 | < th | dose independent | rect. | 8 | 1 |
| 709 | 102.31 | precipitation | 1e-01 | 720 | > th | dose independent | rect. | 24 | 11 |
| 718 | 102.37 | precipitation | 1e-01 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 791 | 102.61 | temperature | 3e+01 | 270 | > th | dose independent | sin | 9 | NA |
| 792 | 102.63 | humidity | 7e+01 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 808 | 102.68 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 8 | 1 |
| 810 | 102.68 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 814 | 102.70 | precipitation | 1e-01 | 720 | > th | dose independent | rect. | 24 | 4 |
| 820 | 102.72 | precipitation | 1e-01 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 829 | 102.76 | precipitation | 1e-01 | 720 | > th | dose independent | rect. | 2 | 2 |
| 833 | 102.77 | wind | 1e+00 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 838 | 102.78 | precipitation | 1e-01 | 720 | > th | dose dependent | rect. | 2 | 2 |
| 839 | 102.78 | precipitation | 1e-01 | 720 | > th | dose dependent | rect. | 20 | 8 |
| 890 | 102.90 | precipitation | 1e-01 | 720 | > th | dose independent | rect. | 7 | 3 |
| 892 | 102.90 | precipitation | 1e-01 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 909 | 102.95 | humidity | 9e+01 | 10 | > th | dose independent | rect. | 8 | 4 |
| 930 | 102.99 | precipitation | 1e-01 | 720 | > th | dose independent | rect. | 20 | 8 |
| 931 | 102.99 | humidity | 9e+01 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 985 | 103.12 | humidity | 9e+01 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 992 | 103.14 | humidity | 6e+01 | 1440 | > th | dose independent | rect. | 7 | 2 |