Os08g0164100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF295 family protein.
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Os08g0164100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF295 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.66 | 0.543 | 2.91 | 0.175 | 0.237 | 17.8 | -0.487 | 56.6 | -0.0201 | 9.29 | 9.066 | 30 | 20 | 15.9 |
| 138.24 | 0.548 | 2.86 | -0.0113 | 0.223 | 5.65 | -0.356 | -- | -0.0247 | 9.07 | 10.53 | 28 | 20.5 | 18 |
| 134.25 | 0.54 | 2.91 | 0.152 | 0.235 | 18.1 | -- | 57.2 | -0.0203 | 9.72 | 9 | 28 | 20 | 15.9 |
| 138.64 | 0.548 | 2.86 | -0.0227 | 0.223 | 5.68 | -- | -- | -0.0234 | 9.53 | 10.43 | 27 | 20.7 | 18.6 |
| 137.54 | 0.546 | 2.91 | 0.15 | -- | 18.1 | -- | 57.1 | -0.02 | -- | 9 | 27 | 20 | 15.9 |
| 169.92 | 0.611 | 2.87 | -0.0585 | 0.257 | -- | -0.426 | -- | -0.0444 | 9.57 | -- | -- | -- | -- |
| 170.56 | 0.612 | 2.87 | -0.0734 | 0.257 | -- | -- | -- | -0.0444 | 9.93 | -- | -- | -- | -- |
| 141.56 | 0.554 | 2.87 | -0.0236 | -- | 5.76 | -- | -- | -0.0225 | -- | 10.27 | 27 | 20.7 | 18.7 |
| 138.65 | 0.548 | 2.86 | -- | 0.223 | 5.68 | -- | -- | -0.0209 | 9.53 | 10.4 | 27 | 20.7 | 18.7 |
| 174.54 | 0.617 | 2.88 | -0.0764 | -- | -- | -- | -- | -0.0444 | -- | -- | -- | -- | -- |
| 170.71 | 0.611 | 2.87 | -- | 0.258 | -- | -- | -- | -0.0362 | 9.95 | -- | -- | -- | -- |
| 141.57 | 0.554 | 2.87 | -- | -- | 5.76 | -- | -- | -0.0198 | -- | 10.26 | 28 | 20.7 | 18.8 |
| 174.69 | 0.617 | 2.87 | -- | -- | -- | -- | -- | -0.0359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.04 | wind | 9 | 30 | > th | dose dependent | rect. | 21 | 15 |
| 9 | 140.99 | wind | 9 | 30 | > th | dose dependent | rect. | 10 | 2 |
| 27 | 141.10 | wind | 9 | 30 | > th | dose dependent | sin | 7 | NA |
| 36 | 142.16 | wind | 9 | 30 | < th | dose independent | sin | 6 | NA |
| 38 | 142.43 | wind | 9 | 30 | > th | dose independent | rect. | 21 | 15 |
| 48 | 142.85 | wind | 9 | 30 | > th | dose independent | sin | 7 | NA |
| 49 | 142.99 | wind | 9 | 30 | > th | dose independent | rect. | 10 | 2 |
| 214 | 151.15 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 1 |
| 314 | 154.52 | wind | 9 | 30 | > th | dose independent | rect. | 10 | 12 |
| 378 | 154.72 | wind | 9 | 30 | > th | dose independent | no | NA | NA |
| 434 | 155.08 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 518 | 157.20 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 563 | 157.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 571 | 157.64 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 650 | 159.32 | wind | 9 | 30 | > th | dose dependent | rect. | 10 | 12 |
| 697 | 159.40 | wind | 9 | 30 | > th | dose dependent | no | NA | NA |
| 911 | 160.60 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 973 | 161.06 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |