BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0164100 Os08g0164100|AK108589
         (431 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G57790.1  | chr1:21404578-21405636 REVERSE LENGTH=353           60   2e-09

>AT1G57790.1 | chr1:21404578-21405636 REVERSE LENGTH=353
          Length = 352

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 95/248 (38%), Gaps = 54/248 (21%)

Query: 10  WSALPEDIIITVMGCLSVLGDLVRSGAVCSTWRDAYATFRRLHLPSTTAQPPWLLYACDA 69
           W  LP +++ +VM  L +  D VR+  VC +W +A  + R +       + PWL+Y  + 
Sbjct: 13  WKDLPLELLSSVMTFLEI-KDNVRASVVCKSWFEAAVSVRVID------KSPWLMYFPET 65

Query: 70  HGPAAAALYCPATGKSLRVPLPAALLDGRPVIGASQGWLVTVDEAPNLHLVLVNPITGAT 129
                   Y P+  K   + LP +L+ G  V  +  GWL+   E  + H VL NP T   
Sbjct: 66  KN--TYDFYDPSNCKKYTMELPKSLV-GFIVRYSKDGWLLMSQEDSS-HFVLFNPFTMDV 121

Query: 130 AALPPITTLHNVERFTSKKGKTRYRVYDDMGYSEASLEYSPAQAREWVYHQVVLSRSPAE 189
            ALP    LH    FT                                Y+Q+V   S   
Sbjct: 122 VALP---FLH---LFT--------------------------------YYQLVGFSSAPT 143

Query: 190 GSACVALLLHRPD-GYVSFARL--GDERWTPVAYPGQDCSTGCRHAIYDDADGLFYTLRY 246
            S CV   +   D G+V+      G   WT +    Q       + ++  ++G+FY L  
Sbjct: 144 SSECVVFTIKDYDPGHVTIRTWSPGQTMWTSMQVESQFLDVDHNNVVF--SNGVFYCLNQ 201

Query: 247 DGSVYAID 254
              V   D
Sbjct: 202 RNHVAVFD 209



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,582,564
Number of extensions: 386993
Number of successful extensions: 830
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 330
Effective length of database: 8,337,553
Effective search space: 2751392490
Effective search space used: 2751392490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)