Os08g0163100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuf2 family protein.
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Os08g0163100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuf2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.47 | 0.492 | 3.28 | -0.327 | 0.388 | -0.434 | -0.499 | 1.55 | 0.409 | 3.71 | 1.1 | 15 | -- | -- |
| 111.78 | 0.492 | 3.26 | -0.262 | 0.407 | -0.319 | -0.705 | -- | 0.426 | 3.71 | 1.1 | 15 | -- | -- |
| 110.16 | 0.489 | 3.28 | -0.328 | 0.384 | -0.44 | -- | 1.75 | 0.41 | 3.49 | 1.117 | 15 | -- | -- |
| 113.21 | 0.496 | 3.26 | -0.244 | 0.404 | -0.311 | -- | -- | 0.43 | 3.6 | 1.146 | 15 | -- | -- |
| 117.01 | 0.504 | 3.28 | -0.351 | -- | -0.663 | -- | 1.93 | 0.42 | -- | 1.113 | 15 | -- | -- |
| 114.44 | 0.502 | 3.26 | -0.212 | 0.506 | -- | -0.655 | -- | 0.421 | 3.89 | -- | -- | -- | -- |
| 115.67 | 0.504 | 3.26 | -0.203 | 0.501 | -- | -- | -- | 0.425 | 3.75 | -- | -- | -- | -- |
| 119.77 | 0.51 | 3.26 | -0.306 | -- | -0.473 | -- | -- | 0.457 | -- | 1.5 | 15 | -- | -- |
| 114.75 | 0.499 | 3.25 | -- | 0.41 | -0.279 | -- | -- | 0.457 | 3.62 | 1.174 | 15 | -- | -- |
| 129.56 | 0.532 | 3.26 | -0.182 | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
| 116.76 | 0.505 | 3.25 | -- | 0.497 | -- | -- | -- | 0.448 | 3.75 | -- | -- | -- | -- |
| 121.98 | 0.514 | 3.25 | -- | -- | -0.447 | -- | -- | 0.484 | -- | 1.4 | 15 | -- | -- |
| 130.43 | 0.533 | 3.25 | -- | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.19 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 3 | 102.46 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 4 | 102.46 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 8 | 102.47 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 9 | 102.47 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 12 | 102.47 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 16 | 102.47 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 25 | 102.47 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 26 | 102.47 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 46 | 102.47 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 64 | 102.53 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 65 | 102.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 70 | 102.68 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 71 | 102.69 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 72 | 102.69 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 74 | 102.74 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 75 | 102.74 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 79 | 102.76 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 91 | 102.85 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 93 | 102.85 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 94 | 102.85 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 98 | 102.85 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 99 | 102.85 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 101 | 102.85 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 106 | 102.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 107 | 102.85 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 109 | 102.85 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 114 | 102.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 116 | 102.87 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 118 | 102.87 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 124 | 102.92 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 126 | 102.93 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 134 | 103.06 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 137 | 103.09 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 138 | 103.11 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 139 | 103.11 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 175 | 103.63 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 184 | 103.95 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 186 | 103.98 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 215 | 104.82 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 217 | 104.92 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 7 |
| 223 | 105.02 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 227 | 105.08 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 236 | 105.16 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 292 | 105.75 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 317 | 105.91 | temperature | 25.0 | 270 | < th | dose independent | sin | 12 | NA |
| 339 | 106.08 | temperature | 25.0 | 270 | > th | dose independent | sin | 12 | NA |
| 417 | 106.61 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 505 | 107.17 | wind | 3.0 | 10 | < th | dose dependent | rect. | 24 | 3 |
| 530 | 107.32 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 533 | 107.32 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 545 | 107.37 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 12 |
| 561 | 107.46 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 562 | 107.46 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 568 | 107.49 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 640 | 107.67 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 681 | 107.81 | radiation | 40.0 | 720 | < th | dose independent | rect. | 15 | 8 |
| 742 | 108.03 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 13 |
| 770 | 108.09 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 782 | 108.14 | temperature | 10.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 784 | 108.14 | temperature | 10.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 823 | 108.28 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 826 | 108.30 | temperature | 10.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 827 | 108.30 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 828 | 108.30 | temperature | 10.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 845 | 108.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 853 | 108.36 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 856 | 108.39 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 860 | 108.41 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 863 | 108.42 | humidity | 50.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 874 | 108.45 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 888 | 108.49 | temperature | 20.0 | 90 | > th | dose dependent | sin | 11 | NA |
| 895 | 108.51 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 14 |
| 923 | 108.57 | wind | 9.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 953 | 108.60 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 976 | 108.65 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 9 |